PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002836.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 573aa    MW: 64389 Da    PI: 6.4097
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002836.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.41.4e-1969171297
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgk.rknratk....sgyWkatgkdkevls 94 
                 ppG+rF Pt++el+++yL++k+eg++ +l  v++e+ i++++P +L +++ka +e++wyfF+ r+ +++++  ++n++++    +++Wkatg+  ++++
  Do002836.1  69 PPGYRFTPTEHELIMDYLRNKIEGRQPPL-AVVNEIAILDWQPGSLVEAYKAyGEHKWYFFTIREPSSSNKMdEPNQKVRvpgvTATWKATGSVVPIVV 166
                 9*************************999.89**************8544443788*******999888754344444333445789*******99998 PP

         NAM  95 k..kg 97 
                    ++
  Do002836.1 167 PakGK 171
                 75433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-1961171IPR003441NAC domain
PROSITE profilePS5100518.35468221IPR003441NAC domain
PfamPF023654.4E-1069161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MEAATAVRQE QHELPQQLQF MEAAAAVRQE QHELAQQLQF PPGYHFVPLE VAAVRQRQQQ  60
ELAQQLQFPP GYRFTPTEHE LIMDYLRNKI EGRQPPLAVV NEIAILDWQP GSLVEAYKAY  120
GEHKWYFFTI REPSSSNKMD EPNQKVRVPG VTATWKATGS VVPIVVPAKG KQQEGVEEPI  180
GDEEKIVIGQ YALCSIQRKQ HSDAVDDAGE GTSSSKKSRR KRTKATNIDP GKTKKRRMNK  240
KAASTQQEGM QLQQQEIAPV KAPLKLKSRA RKSATRRENK ALEELVQAAE GQQQKQQHQE  300
APPFSPVVPS LTPSQQAPPQ ASQEEQKSLA AYAPSVLPVV PLQGYPSLPN GMLGASAPMH  360
HDEEDTVARS FQRDDNDYMT LLENLMSCNQ DEQLASFIDD EVIADSHAEL QFYQSQGYLD  420
LSELFDQHVY TGQPQHLPGN TTLNDSSWNH GQHQGENVAF GSPGDIDSLP ADDDFDYMSV  480
LRFPLPDGNY ELVLSTADGS QERYQARRAA RGLFQLVPQV ENSIWFRVVN PLYALPRPAR  540
AEALRRCRVR RQRRKARRGS RFVSTGEANA DAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-11571644105Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219236RKRTKATNIDPGKTKKRR
2220234KRTKATNIDPGKTKK
3549557RRQRRKARR
4551557QRRKARR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002836.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5UXG80.0A0A1E5UXG8_9POAL; Uncharacterized protein
STRINGPavir.J26931.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-15NAC domain containing protein 47