PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002784.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 425aa    MW: 48319.7 Da    PI: 5.9536
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002784.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.6e-19131177148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
       Do002784.1 131 KGQWTPEEDRKLVKLVEQFGLRKWSYIAQMLP-GRVGKQCRERWHNHL 177
                      799*****************************.*************97 PP
2Myb_DNA-binding52.41.2e-16185225345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W+ eEd  l++a+k+ G++ W+ Ia++++ gRt++++k++w+
       Do002784.1 185 IWSDEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 225
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.508126181IPR017930Myb domain
SuperFamilySSF466891.15E-31128224IPR009057Homeodomain-like
SMARTSM007171.7E-15130179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-30132184IPR009057Homeodomain-like
CDDcd001671.57E-15134177No hitNo description
PfamPF139211.7E-18134191No hitNo description
PROSITE profilePS5129419.544182232IPR017930Myb domain
SMARTSM007172.5E-16182230IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-21185230IPR009057Homeodomain-like
CDDcd001672.08E-13186228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDFTCFQPHT GICNYLPFDT FMQQNGQYEL YPVDHPFEAI GDYISLVPPA TFNDLGHQYF  60
AEREIKKPIF DSASSIRLRV GSQLPLLTPK TEVSHLVESN LGSYKAYDMS GRFVPRKRTS  120
SNFLKKANVV KGQWTPEEDR KLVKLVEQFG LRKWSYIAQM LPGRVGKQCR ERWHNHLRPN  180
IKKDIWSDEE DMVLIQAHKE VGNKWAEIAK RLPGRTENSI KNHWNATKRR QFARRRSRSS  240
SKGPKSGTLL QNYIKGLGIG PSKNVAPLAQ PTLPPASPAT PGAKSAKVDE RLEHNSPSNI  300
LDSQGILSVH EYICSEAQSC EDLLAPICDD FSVDMCDGLF DMKDYGFQVY TVDNDIDMNY  360
IFNHLDHAIK ADPEIDMEMM WDDEVLGCVE PAEPAQFETV NVKEEMDLVE MMAATQNRAG  420
DENNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-461292312104C-Myb DNA-Binding Domain
1msf_C3e-461292312104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002784.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.10.0transcription factor MYB41-like
TrEMBLA0A1E5V2V30.0A0A1E5V2V3_9POAL; Transcription factor MYB98
STRINGPavir.J02497.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-65myb domain protein 98