PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002774.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 426aa    MW: 45489.2 Da    PI: 9.8249
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002774.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.61.6e-10329349222
                 --SS-EEEEEEE--TT-SS-E CS
        WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                  D y+WrKYGqK++kgs++pr
  Do002774.1 329 ADNYSWRKYGQKPIKGSPHPR 349
                 69******************9 PP
2WRKY461e-143734112259
                 EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++YYrC+s+ +Cp++k+ver+++d  ++++tYe++Hnh 
  Do002774.1 373 KGYYRCSSKkDCPARKHVERCRSDAAMLIVTYENDHNHA 411
                 68******99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.8E-13293326IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.2E-30316413IPR003657WRKY domain
PROSITE profilePS5081124.168323413IPR003657WRKY domain
SuperFamilySSF1182906.28E-8324349IPR003657WRKY domain
SMARTSM007741.2E-31328412IPR003657WRKY domain
PfamPF031061.7E-6330349IPR003657WRKY domain
PfamPF031064.3E-12373410IPR003657WRKY domain
SuperFamilySSF1182904.18E-12373413IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEVVEEANRA AVESCKKLVA FLSLSGGDPF RPMPVAAETD EAVARFGKVV AVLSDRLGHA  60
RARVGKRSPA PPVDASCLMD HPSLPPRHTP NGSHIVSSAP VAPPMPTTTA TSRSVAPMRS  120
LEAEVAPAVL MSPCATVTLA PAAAKKFDRN IFLETPLLEL NSSSVLPSMA MAAVQKNTSK  180
VAAVPAPNPC AAAAAATAHI QFQPQQQQAK KQKSFQFDHT PNGEQFHIEV PVTLPRGGGG  240
GAKEVISFSF DNNSVCTSSA ATSFFTSISS QLISMSDAAT SSPATAKKAC AKRGEDGSVK  300
CHCPKKKKPR EKRVVRVPAI SDKNADIPAD NYSWRKYGQK PIKGSPHPRP IVFFIVLGFL  360
QFRHGIELLV SLKGYYRCSS KKDCPARKHV ERCRSDAAML IVTYENDHNH AQPLDPSVLT  420
ANAAEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-153264131274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002774.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432520.0AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678752.10.0protein WRKY1
TrEMBLA0A1E5V2Z90.0A0A1E5V2Z9_9POAL; Protein WRKY1
STRINGSi040171m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-31WRKY DNA-binding protein 7