PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002762.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 321aa    MW: 33614.9 Da    PI: 6.5241
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002762.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-091664245
                     SSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45
                     g+WT e ++ + +av+++  g      +W++ a+ +  g+t+++++ ++ 
       Do002762.1 16 GAWTREQEKAFENAVAMMEEGeaxgdaRWEKLAEAVE-GKTAEEVRRHYE 64
                     89***********************************.**********95 PP
2Myb_DNA-binding39.71.2e-12149193347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
       Do002762.1 149 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 193
                      6*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.6371371IPR017884SANT domain
SMARTSM007179.5E-71469IPR001005SANT/Myb domain
PfamPF002491.0E-71664IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-41664IPR009057Homeodomain-like
CDDcd001673.31E-71867No hitNo description
SuperFamilySSF466893.52E-91873IPR009057Homeodomain-like
PROSITE profilePS5129416.329142198IPR017930Myb domain
SuperFamilySSF466894.88E-16144199IPR009057Homeodomain-like
SMARTSM007179.3E-11146196IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.7E-17147196IPR006447Myb domain, plants
PfamPF002493.7E-11149193IPR001005SANT/Myb domain
CDDcd001673.85E-10149194No hitNo description
Gene3DG3DSA:1.10.10.601.1E-10149192IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAVEEASSSG GEEGSGAWTR EQEKAFENAV AMMEEGEAXG DARWEKLAEA VEGKTAEEVR  60
RHYELLVEDI DGIEAGRVPL PTYAADGGAE EGGSGGGGGG GKKGAXGRRP LAAALIWIWG  120
RGRGGARGWE GGSGQRYVDL THERSKGIAW TEDEHRLFLL GLEKYGKGDW RSISRNFVIS  180
RTPTQVASHA QKYFIRLNSM NRERRRSSIH DITSVNNGDA SATQGPITGQ TNGQAANPGK  240
PSKQSPQAAN TPPGVDAYGT TIGQPVGGPL VSAVGTPVLP VAAPPHMAYG MHAPVPGAVV  300
PGAPVNIASM PYPMPPPSSH G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-161488678RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002762.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794430.0HF679443.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB37 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448771.11e-150transcription factor SRM1
SwissprotQ9FNN62e-94SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1E5VB290.0A0A1E5VB29_9POAL; Transcription factor DIVARICATA
STRINGSb06g032880.11e-149(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-65MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]