PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002743.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | TCP | ||||||||
Protein Properties | Length: 233aa MW: 25136.9 Da PI: 5.3458 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.8 | 9.4e-35 | 72 | 138 | 3 | 69 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssss 69 ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ lt+ s+ s Do002743.1 72 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLTEPSQRS 138 689**********************************************************984333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-33 | 73 | 136 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.922 | 73 | 131 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MLLPPAAHLD QHYADQFFPG HGHFNSETLE AVLRPPRAAA ECEAAVVTAP LGGRNGAAAA 60 GQGHARVRKR PFRTDRHSKI RTAQGVRDRR MRLSLDVARD FFALQDRLGF DKASKTVDWL 120 LTQSKPAIDR LTEPSQRSVG GGSDAALSPP TSGAPDGSGK MRGGFVEKVG TRNSGSAFME 180 HSCELDCLVT AAPMLGEYYY AGLSEMMSNN GGEGDDDGEY EEDGDDFLDG MQY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002743.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804518.1 | 1e-127 | transcription factor TB1-like | ||||
TrEMBL | A0A1E5UTQ5 | 1e-171 | A0A1E5UTQ5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba01820.1.p | 1e-108 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 6e-28 | TCP family protein |