PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 36619.8 Da PI: 6.1384 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.9 | 8.7e-14 | 113 | 159 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++ +++k+L Do002738.1 113 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVLDHVKEL 159 78*************************9.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.628 | 110 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.76E-13 | 113 | 162 | No hit | No description |
Pfam | PF00010 | 3.0E-11 | 113 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-14 | 114 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-14 | 114 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-13 | 116 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 3.39E-5 | 212 | 261 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 8.6E-6 | 212 | 261 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MWGGGVEHGS QEAAHHQLLP WLAAAPFSEP AVAAGFGAMG AYACDGVGGL GLGHGGVFGF 60 GFDAVQQQQQ RAAEGSGNGK AAAVSGLLGS LQAELGRMTA REMMDAKALA ASRSHSEAER 120 RRRQRINGHL ARLRSLLPNT TKTDKASLLA EVLDHVKELK RQTSAMMAAA AAAVAGDDEG 180 AAGPAQMLPT EADELSVDAA VDRVGQLVLR ASLCCEDRPD LIPDIVRALA ALRMRARRAE 240 ITTLGGRVRS VLLITADDEG ADDDHQGDDE DDDGRRLNAR LLRGDDDDHE RTASSRRRHE 300 CIASVQEALR GVMDRRAASS DTSSSGGGGG SIKRQRMNYG GAQEHCSG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002738.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971189 | 0.0 | EU971189.1 Zea mays clone 359116 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001347905.1 | 1e-136 | uncharacterized protein LOC100279487 | ||||
TrEMBL | A0A1E5UTR8 | 0.0 | A0A1E5UTR8_9POAL; Transcription factor bHLH30 | ||||
STRING | GRMZM2G176141_P01 | 1e-136 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 6e-45 | bHLH family protein |