PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002704.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 334aa MW: 36072.9 Da PI: 7.0441 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.1 | 1.9e-09 | 192 | 232 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++YIk L Do002704.1 192 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 232 699*****************87.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.555 | 183 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-15 | 188 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-13 | 189 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-15 | 189 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-7 | 193 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.11E-7 | 206 | 237 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MDNITHNSSS SSSWDLDMSL GSHHHPLLFD SHPNPAPPPP PPLPFHLSTS HHHHHQPPPH 60 PPHHQHHHHH PGLDPSPSSS LFPPHNHRLH HLGLDIDPAS SHHRHHEYGG GHEQQEPGGH 120 EQDEMRQQEA GAGHQEDRGG AGAEDVEEEL GAMKEMMYRI AAMQPVDIDP ATIKKPRRRN 180 VRISEDPQSV AARHRRERIS ERIRILQRLV PGGTKMDTAS MLDEAIRYIK FLKRQVQELQ 240 HQPPQQYPGA AAAGAAAGGA TAAGPSTSVV GPPGRPGGPF LPLGPGPLID WAGFVRPVDI 300 HGPTSSSSSS SMGGAHAALG FGFSSAGQSS HGMH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002704.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065018 | 1e-149 | BT065018.1 Zea mays full-length cDNA clone ZM_BFc0135I21 mRNA, complete cds. | |||
GenBank | EU974197 | 1e-149 | EU974197.1 Zea mays clone 442660 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822758.1 | 1e-131 | transcription factor HEC2-like | ||||
TrEMBL | A0A1E5US49 | 0.0 | A0A1E5US49_9POAL; Transcription factor HEC3 | ||||
STRING | Si015197m | 1e-116 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9051 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09750.1 | 3e-35 | bHLH family protein |