PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002667.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SRS
Protein Properties Length: 444aa    MW: 45885 Da    PI: 8.5008
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002667.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702214.72.2e-662183764154
      DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrel..kskkqsalsstklssa 94 
                  ++sCqdCGn+akkdC+h+RCRtCC+srgf+CathvkstWvpaakrrerqqqlaa+ + aa+++      a+aaskr+rel  +  +  +++s+ ++++
  Do002667.1 218 AGTSCQDCGNNAKKDCSHMRCRTCCRSRGFSCATHVKSTWVPAAKRRERQQQLAALFRGAANNNsaaaaaAAAASKRPRELvrSLGRLPSANSAMVTTT 316
                 4579****************************************************9999888877777777888888888553334444455555555 PP

      DUF702  95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                 +s+      ++P+e+++eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++
  Do002667.1 317 TSSGDGGGGRFPPELNVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 376
                 5555666778***********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.7E-63219375IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.4E-25221263IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.2E-18326374IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MGLDEEGEAP GRDGLCDTIA WSPTFSFSYW SKSRKLRNVH TVALQDQNCK WPLFPKETNN  60
DLIDSLAQSV SVVSFIGTSR DMHLRSYVRE SRSCGGFFVV HSLAHLDGWW LLPRMAGFSL  120
RGGGGGGGGR GGDRGGDHPI GADSLFLYAR GAASGGGGGG IGFQLWHPHQ QAAAAAAPHT  180
SQFFSSGVAT GVVLGFSSHD GSGGIGGPGG GGAGGGRAGT SCQDCGNNAK KDCSHMRCRT  240
CCRSRGFSCA THVKSTWVPA AKRRERQQQL AALFRGAANN NSAAAAAAAA ASKRPRELVR  300
SLGRLPSANS AMVTTTTSSG DGGGGRFPPE LNVEAVFRCV RIGPVDEPDA ELAYQTAVSI  360
GGHTFKGILR DHGPADDAAV GQLPPSSAEY HQLTGQAREG SSPAGSSEAA ATVATSAAVL  420
MDPYPTPIGA FAAGTQFFPH NPRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120129RGGGGGGGGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002667.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043291e-148AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12.
GenBankAP0054631e-148AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01.
GenBankAP0149621e-148AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813341.11e-154protein SHI RELATED SEQUENCE 1
TrEMBLA0A2T7DU751e-159A0A2T7DU75_9POAL; Uncharacterized protein
STRINGPavir.J38504.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-51Lateral root primordium (LRP) protein-related