PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002667.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | SRS | ||||||||
Protein Properties | Length: 444aa MW: 45885 Da PI: 8.5008 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 214.7 | 2.2e-66 | 218 | 376 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrel..kskkqsalsstklssa 94 ++sCqdCGn+akkdC+h+RCRtCC+srgf+CathvkstWvpaakrrerqqqlaa+ + aa+++ a+aaskr+rel + + +++s+ ++++ Do002667.1 218 AGTSCQDCGNNAKKDCSHMRCRTCCRSRGFSCATHVKSTWVPAAKRRERQQQLAALFRGAANNNsaaaaaAAAASKRPRELvrSLGRLPSANSAMVTTT 316 4579****************************************************9999888877777777888888888553334444455555555 PP DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +s+ ++P+e+++eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++ Do002667.1 317 TSSGDGGGGRFPPELNVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 376 5555666778***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.7E-63 | 219 | 375 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.4E-25 | 221 | 263 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.2E-18 | 326 | 374 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MGLDEEGEAP GRDGLCDTIA WSPTFSFSYW SKSRKLRNVH TVALQDQNCK WPLFPKETNN 60 DLIDSLAQSV SVVSFIGTSR DMHLRSYVRE SRSCGGFFVV HSLAHLDGWW LLPRMAGFSL 120 RGGGGGGGGR GGDRGGDHPI GADSLFLYAR GAASGGGGGG IGFQLWHPHQ QAAAAAAPHT 180 SQFFSSGVAT GVVLGFSSHD GSGGIGGPGG GGAGGGRAGT SCQDCGNNAK KDCSHMRCRT 240 CCRSRGFSCA THVKSTWVPA AKRRERQQQL AALFRGAANN NSAAAAAAAA ASKRPRELVR 300 SLGRLPSANS AMVTTTTSSG DGGGGRFPPE LNVEAVFRCV RIGPVDEPDA ELAYQTAVSI 360 GGHTFKGILR DHGPADDAAV GQLPPSSAEY HQLTGQAREG SSPAGSSEAA ATVATSAAVL 420 MDPYPTPIGA FAAGTQFFPH NPRT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 129 | RGGGGGGGGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002667.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004329 | 1e-148 | AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12. | |||
GenBank | AP005463 | 1e-148 | AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01. | |||
GenBank | AP014962 | 1e-148 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813341.1 | 1e-154 | protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A2T7DU75 | 1e-159 | A0A2T7DU75_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J38504.1.p | 1e-163 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 3e-51 | Lateral root primordium (LRP) protein-related |