PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002598.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | Dof | ||||||||
Protein Properties | Length: 342aa MW: 34971 Da PI: 8.8753 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.9 | 4.7e-38 | 111 | 168 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s Do002598.1 111 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 168 579***************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-31 | 93 | 166 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-31 | 112 | 166 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.385 | 112 | 166 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 114 | 150 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MVFSSLPIFL DPPNWGQMQM QQQQQQQQQP LQCLLGGGGG VGSDHHHLMP PPSGLAPLPG 60 GPADTAASAP AGGGSSTSMQ AAGAGAAQPR PVVSMAERAR LARVPLPDPG TLRCPRCDST 120 NTKFCYFNNY SLSQPRHFCK ACRRYWTRGG ALRNVPVGGG CRRNTKRSSK KSSRSGQGGG 180 AGATAATSSS STTSTSTTAT TTTTTSAAMA AAEAIASMQA QLPHLGLPPA AAAAALEASL 240 EGYHHYLPFQ MQPQFLQQAG LHGYHFADDG SGVLADGFPR GVVASGLLAQ LAAVKMEEHS 300 SGGGGGMAAH EQSYWPGSTG GGSGWPGEFL SGFSSSSSGN VL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002598.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582419 | 0.0 | KC582419.1 Sorghum bicolor dof28 protein (dof28) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008668091.1 | 1e-158 | dof zinc finger protein DOF2.2 isoform X1 | ||||
Swissprot | Q9M2U1 | 1e-43 | DOF36_ARATH; Dof zinc finger protein DOF3.6 | ||||
TrEMBL | A0A1E5VBM3 | 0.0 | A0A1E5VBM3_9POAL; Dof zinc finger protein DOF5.1 | ||||
STRING | Pavir.J05047.1.p | 1e-160 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 8e-39 | Dof family protein |