PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002547.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 344aa    MW: 36982.9 Da    PI: 9.7416
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002547.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.9e-082112332346
                      -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqk 46 
                       W+ Ia++++ gRt++++k++w++
       Do002547.1 211 EWSIIASKLP-GRTDNDIKNYWNT 233
                      4*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813833.92E-51136IPR001810F-box domain
PROSITE profilePS5018111.3795197IPR001810F-box domain
SuperFamilySSF813831.05E-1355105IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.3E-95693No hitNo description
PfamPF006464.0E-95791IPR001810F-box domain
SMARTSM002565.5E-95797IPR001810F-box domain
PROSITE profilePS500906.411204235IPR017877Myb-like domain
SuperFamilySSF466894.08E-7206239IPR009057Homeodomain-like
CDDcd001671.01E-5209235No hitNo description
PfamPF002497.4E-6210233IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-11210239IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAPPSPHSRA SVRPLPLDAL YEILLRLPAK DLCRLRALLY PPMAPPSPHS RARVRPLPLD  60
ALYEVLLRLP AKDLCRLRAV CRTWRSLLPD PQFIAARAAR HPETLIIAGY HANRWAAAGP  120
LFDIMDLSGR VIKRVVAPAS WGATTEWAMT AQLDAFCVVT GVGTNCLLLN PATGAVTVLT  180
RGFSEEHLMR ERGISSCMEL VTIGKVASTG EWSIIASKLP GRTDNDIKNY WNTKLKKKAM  240
AAAAFAAPAT PPPAALSPAS SSATSSSGNV RFAGCPQPQA AQHQGQMMHF HAPAPQRRQN  300
TVAQLDGSAS GGDWAPSAAA LDDVFLPDLI GSGEQLFLKL IELT
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002547.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794308e-41HF679430.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB24 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955749.15e-44uncharacterized protein LOC101773717
TrEMBLA0A0A8YJ052e-51A0A0A8YJ05_ARUDO; Uncharacterized protein
STRINGPavir.J06750.1.p6e-59(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.13e-12myb domain protein 68