PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002541.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 418aa    MW: 44735.4 Da    PI: 8.4272
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002541.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.13.6e-49461712128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+++  + kew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +  ++++ +
  Do002541.1  46 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELIAFLDLYRFDPWELPAMAVMGGKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRGENKRPI 143
                 79***************************.89***************7767789********************************************* PP

         NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                 glkktLvfy+g+apkg++++W+m+eyrl
  Do002541.1 144 GLKKTLVFYSGKAPKGVRSSWIMNEYRL 171
                 **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5644195IPR003441NAC domain
PROSITE profilePS5100554.66945195IPR003441NAC domain
PfamPF023651.2E-2447171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSRDLEDGQG TVDSVITAAA AAAAGGGEGS SEAAVGGDAH DNDVVMPGFR FHPTEEELIE  60
FYLRRKVEGK RFNVELIAFL DLYRFDPWEL PAMAVMGGKE WFFYVPRDRK YRNGDRPNRV  120
TASGYWKATG ADRMIRGENK RPIGLKKTLV FYSGKAPKGV RSSWIMNEYR LPPPSTDADP  180
LIPKSEISLC RVYKRSGIDD GHGQSSSSTQ ASSGRRISSR TGVPTGRHGS SPSSTPLSPT  240
TQLSPTQQQL SSFHLLQGEC SSSSPPAPPI MDQVVTVHSA PQLLPPPRPC TYTPAATIRS  300
TAAVAPPQPS QGAAALVPTY SLFNMAAAAP MAGSSRPIDE LSTLVGPSQA YANLSAATGS  360
HFLPLLPALP PPMPQMTPLG PLPIAPPPAS VADNKLSWDW NQPVPDRTAQ DYNASGFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-554719519165NO APICAL MERISTEM PROTEIN
1ut4_B7e-554719519165NO APICAL MERISTEM PROTEIN
1ut7_A7e-554719519165NO APICAL MERISTEM PROTEIN
1ut7_B7e-554719519165NO APICAL MERISTEM PROTEIN
4dul_A7e-554719519165NAC domain-containing protein 19
4dul_B7e-554719519165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002541.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0604780.0BT060478.1 Zea mays full-length cDNA clone ZM_BFb0004F04 mRNA, complete cds.
GenBankHQ8587620.0HQ858762.1 Zea mays clone UT1609 NAC transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962060.10.0NAC domain-containing protein 35
TrEMBLA0A1E5W2410.0A0A1E5W241_9POAL; NAC domain-containing protein 35
STRINGSi022103m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-93NAC domain containing protein 35