PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do002533.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 865aa MW: 93735.1 Da PI: 7.1936 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.9e-18 | 24 | 81 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L + + +++ +q+kvWFqNrR +ek+ Do002533.1 24 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 81 6789****************************************************97 PP | |||||||
2 | START | 159.7 | 2.2e-50 | 173 | 380 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 +aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+ + W ++++ +++l vi +g g+++l+++++ Do002533.1 173 IAEETLAEFMSKATGTAVNWVQMVGMKPGPDSVGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKGRSSWYRDCRHVDILHVIPTGngGTIELIYMQT 270 68999*****************************************************.8999999888****************************** PP TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193 +al++l+ Rdf+++Ry+ l +g++vi+++S+++ + p ++++Rae lpSg+li+p+++g+s + +v+hvdl++++++++lr+l++s + ++ Do002533.1 271 YALTTLAGpRDFWTLRYTSGLDDGSLVICERSLTQSTGGPCgpnAPNFIRAEILPSGYLIRPCDGGGSMIYIVDHVDLNAKSVPEVLRPLYESPKILAQ 369 ******999****************************9887788******************************************************* PP HHHHHHTXXXX CS START 194 ktwvatlqrqc 204 k++ a+l++ + Do002533.1 370 KMTAAALRHIR 380 ******99765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.24 | 18 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.5E-15 | 20 | 86 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.22E-16 | 22 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.63E-15 | 23 | 83 | No hit | No description |
Pfam | PF00046 | 9.8E-16 | 24 | 81 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-18 | 25 | 81 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 2.44E-6 | 75 | 114 | No hit | No description |
PROSITE profile | PS50848 | 26.515 | 163 | 363 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.1E-21 | 171 | 355 | IPR023393 | START-like domain |
SMART | SM00234 | 2.3E-41 | 172 | 382 | IPR002913 | START domain |
Pfam | PF01852 | 3.4E-48 | 173 | 380 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.2E-35 | 173 | 383 | No hit | No description |
Pfam | PF08670 | 6.2E-20 | 683 | 784 | IPR013978 | MEKHLA |
Pfam | PF08670 | 1.2E-12 | 815 | 864 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 865 aa Download sequence Send to blast |
MAAVASRERL SPGAGAPQVD TGKYVRYTPE QVEALERVYS ECPKPSSLRR QQLIRDCPIL 60 SNIEPKQIKV WFQNRRCREK QRKEASRLQT VNRKLSAMNK LLMEENDRLQ KQVSRLVYDN 120 GYMKNQLHSP SVATTDNSCE SVVTSGQHYQ QQNPAVPHPP QRDANNPAGL LAIAEETLAE 180 FMSKATGTAV NWVQMVGMKP GPDSVGIIAV SHNCSGVAAR ACGLVSLEPT KVAEILKGRS 240 SWYRDCRHVD ILHVIPTGNG GTIELIYMQT YALTTLAGPR DFWTLRYTSG LDDGSLVICE 300 RSLTQSTGGP CGPNAPNFIR AEILPSGYLI RPCDGGGSMI YIVDHVDLNA KSVPEVLRPL 360 YESPKILAQK MTAAALRHIR QIAHESSGEI PYGAGRQPAV LRTFSQRLSR GFNDAVSGFP 420 DDGWSPFLSS DGPEDVTITV NSSPNKLVGS HVSPAPFFSA IGGGIMCAKA SMLLQNVPPA 480 LLVRFLREHR SEWADPGVDA YSAASLRASP YAVPGLRAGG FMGNQVILPL ARTLEHEELC 540 SGVDENAPGA CAQLVFAPID ESFADDAPLL PSGFRVIPLD DKMDMPSATR TLDLASALEV 600 GSATGSRDSS DASGTCTTRS VLTIAFQFSF ENHLRESVAA MARQYVRGVM ASVQRVAMAI 660 APSRLGAHIQ LKHPPGSPEA LALSTWIGRS YRVHTGTEIC WSDTEGADSP LMPFWKHSDA 720 ILSCSLKPPF MLKFANSAGF DILETTMVNI QDMPLEAVLD DEGRKALFSE LPKIMQQVLV 780 DQISVVPSSC FYLPIGGMMM KGIEGLKSGR VSSSRLQGLA YLPGGVCRSS MGRQASYEQA 840 VAWKVVGDDG APQGLALMLA NWTFI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do002533.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT067483 | 0.0 | BT067483.1 Zea mays full-length cDNA clone ZM_BFc0058F09 mRNA, complete cds. | |||
GenBank | HQ858784 | 0.0 | HQ858784.1 Zea mays clone UT1770 HB homeobox transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963232.1 | 0.0 | homeobox-leucine zipper protein HOX33 | ||||
Swissprot | A2ZMN9 | 0.0 | HOX33_ORYSI; Homeobox-leucine zipper protein HOX33 | ||||
Swissprot | Q2QM96 | 0.0 | HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33 | ||||
TrEMBL | A0A1E5VQZ5 | 0.0 | A0A1E5VQZ5_9POAL; Homeobox-leucine zipper protein HOX33 | ||||
STRING | Si021201m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|