PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002458.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | Nin-like | ||||||||
Protein Properties | Length: 561aa MW: 64060.3 Da PI: 8.3462 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 84.1 | 1.3e-26 | 122 | 172 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +++e +s++Fs pik+AA+eL+v++T+LKr+CR++GI+RWPhRk+ksl Do002458.1 122 TKALTFELVSNHFSIPIKQAARELNVGVTLLKRRCRELGIPRWPHRKVKSL 172 799**********************************************97 PP | |||||||
2 | RWP-RK | 76.8 | 2.5e-24 | 322 | 372 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +++e +s++ s+pik+AA+eL++++T+LKr CR++GI+RWPhRk++sl Do002458.1 322 KKALTFELVSQHSSMPIKQAARELNMGVTLLKRWCRELGIPRWPHRKVRSL 372 799**********************************************97 PP | |||||||
3 | RWP-RK | 73.1 | 3.6e-23 | 440 | 490 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +++e +s++Fs+p ++AA+eL++++T LK++CR++GI+RWPhRk++sl Do002458.1 440 AKALTFELVSQHFSMPKNQAAQELNLGVTDLKKRCRELGIPRWPHRKVQSL 490 589*********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.644 | 107 | 193 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.2E-22 | 125 | 172 | IPR003035 | RWP-RK domain |
PROSITE profile | PS51519 | 17.643 | 308 | 392 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.6E-19 | 325 | 372 | IPR003035 | RWP-RK domain |
PROSITE profile | PS51519 | 17.803 | 426 | 510 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.1E-21 | 443 | 490 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MEVSFAMEEL RFYEEGDYYQ GLKLHADESY SRFDFSADYL LGEETHFCAI SCPESSSSQD 60 ELGCLTKVDF ESFWAQVEEE EARRKSKEGD CEKALIKLEP GTGSVQKGAE MQGRPRSGPE 120 KTKALTFELV SNHFSIPIKQ AARELNVGVT LLKRRCRELG IPRWPHRKVK SLQTLIDSVQ 180 ELWKQTEQVA RLAQTKKLIE ERPDVMLDQE TKRLRQACFK ETFKRRRLMG HGGTWPGLSL 240 AMLALVLKFL EFTFFLFLVN ADELGCLSEV DFASFWAQMV EDARRRSKEG DCEKALIKLE 300 PGTGIVQKGA EMQGRPRSGQ EKKALTFELV SQHSSMPIKQ AARELNMGVT LLKRWCRELG 360 IPRWPHRKVR SLQRLIDNIQ VSASLALALA SNSVQPVFFF LNETMSSLDT AREKAHELDY 420 DSVEQSPQMK GRPAGGGSEA KALTFELVSQ HFSMPKNQAA QELNLGVTDL KKRCRELGIP 480 RWPHRKVQSL QTLIDNVQEL GKETEQVDGH LTRIVVDRLE QTKKLIEERP EMPLDEKTTQ 540 LSQACYKERS KRKLKAQHRD G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 227 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002458.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955211.2 | 8e-97 | protein RKD3 | ||||
Swissprot | Q9M9U9 | 1e-29 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A2S3GTB4 | 2e-94 | A0A2S3GTB4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00708.1.p | 7e-96 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 8e-32 | RWP-RK domain-containing protein |