PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002458.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Nin-like
Protein Properties Length: 561aa    MW: 64060.3 Da    PI: 8.3462
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002458.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.11.3e-26122172252
      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 +k +++e +s++Fs pik+AA+eL+v++T+LKr+CR++GI+RWPhRk+ksl
  Do002458.1 122 TKALTFELVSNHFSIPIKQAARELNVGVTLLKRRCRELGIPRWPHRKVKSL 172
                 799**********************************************97 PP

2RWP-RK76.82.5e-24322372252
      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 +k +++e +s++ s+pik+AA+eL++++T+LKr CR++GI+RWPhRk++sl
  Do002458.1 322 KKALTFELVSQHSSMPIKQAARELNMGVTLLKRWCRELGIPRWPHRKVRSL 372
                 799**********************************************97 PP

3RWP-RK73.13.6e-23440490252
      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  k +++e +s++Fs+p ++AA+eL++++T LK++CR++GI+RWPhRk++sl
  Do002458.1 440 AKALTFELVSQHFSMPKNQAAQELNLGVTDLKKRCRELGIPRWPHRKVQSL 490
                 589*********************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.644107193IPR003035RWP-RK domain
PfamPF020427.2E-22125172IPR003035RWP-RK domain
PROSITE profilePS5151917.643308392IPR003035RWP-RK domain
PfamPF020421.6E-19325372IPR003035RWP-RK domain
PROSITE profilePS5151917.803426510IPR003035RWP-RK domain
PfamPF020427.1E-21443490IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MEVSFAMEEL RFYEEGDYYQ GLKLHADESY SRFDFSADYL LGEETHFCAI SCPESSSSQD  60
ELGCLTKVDF ESFWAQVEEE EARRKSKEGD CEKALIKLEP GTGSVQKGAE MQGRPRSGPE  120
KTKALTFELV SNHFSIPIKQ AARELNVGVT LLKRRCRELG IPRWPHRKVK SLQTLIDSVQ  180
ELWKQTEQVA RLAQTKKLIE ERPDVMLDQE TKRLRQACFK ETFKRRRLMG HGGTWPGLSL  240
AMLALVLKFL EFTFFLFLVN ADELGCLSEV DFASFWAQMV EDARRRSKEG DCEKALIKLE  300
PGTGIVQKGA EMQGRPRSGQ EKKALTFELV SQHSSMPIKQ AARELNMGVT LLKRWCRELG  360
IPRWPHRKVR SLQRLIDNIQ VSASLALALA SNSVQPVFFF LNETMSSLDT AREKAHELDY  420
DSVEQSPQMK GRPAGGGSEA KALTFELVSQ HFSMPKNQAA QELNLGVTDL KKRCRELGIP  480
RWPHRKVQSL QTLIDNVQEL GKETEQVDGH LTRIVVDRLE QTKKLIEERP EMPLDEKTTQ  540
LSQACYKERS KRKLKAQHRD G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223227KRRRL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002458.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955211.28e-97protein RKD3
SwissprotQ9M9U91e-29RKD1_ARATH; Protein RKD1
TrEMBLA0A2S3GTB42e-94A0A2S3GTB4_9POAL; Uncharacterized protein
STRINGPavir.Aa00708.1.p7e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45903365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.18e-32RWP-RK domain-containing protein