PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002449.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 35670.3 Da PI: 7.9157 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.9 | 7.2e-18 | 8 | 55 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 + pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLp+ Do002449.1 8 MLPGFRFHPTDEELVRFYLKRKIQQKSLPI-ELIRQLDIYKYDPWDLPS 55 579***************************.89**************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-24 | 7 | 104 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 16.356 | 8 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-7 | 10 | 51 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MEKQDEVMLP GFRFHPTDEE LVRFYLKRKI QQKSLPIELI RQLDIYKYDP WDLPSRAAKG 60 VKTDWMMHXF RLPSLTDPSL PPKKPLEKTI PPNDSWAICR IFKKTNSTAQ RALSHSWVSP 120 PLSSTNENYI RPSSQVTQRS QHSSEKTSST MTDIISSTIQ FTGSSYMPSI VSSCRNPLSI 180 IDSSSSRPAA SLVLPPSNAE HQTMSVLSAI PLDLPAGMDA TSMVLNASPT TLQNLDRIPT 240 NIEFSQPHHP NNSIIMASRC TVDLPDIGNS ANSAPRLINF PFNLQGALPD DWRMTLPWDF 300 LPCTTEVSTN YQSTKCFT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-14 | 10 | 62 | 17 | 69 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002449.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC196472 | 0.0 | AC196472.3 Zea mays BAC clone ZMMBBb-235B12 from chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679437.1 | 1e-173 | putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A1E5WD94 | 0.0 | A0A1E5WD94_9POAL; Uncharacterized protein | ||||
STRING | Si019308m | 1e-172 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13717 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 4e-27 | NAC domain containing protein 94 |