PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do002437.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 412aa MW: 44753.4 Da PI: 5.7265

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do002437.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	241	260	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Do002437.1 241 FSCPVCYKTFNRYNNMQMHM 260 89*****************9 PP
2	zf-C2H2	12.6	0.00043	327	347	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ Do002437.1 327 CRKCGKAFAVKGDWRTHEKNC 347 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.48E-5	237	263	No hit	No description
SMART	SM00355	0.45	241	263	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	241	268	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.4E-6	241	260	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	243	263	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.38E-6	309	345	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.4E-5	312	345	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	82	325	345	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.621	325	345	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	351	374	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MEDPYTSFFK NPYYYYTTSF PAAPPSHLPP PLPPYTTLYP ASVAAAPQYP ACFFQPQPTL 60 PPLHDSPPSP PLREALPLLS QSPTRGASRP HVAADSDDDD DADDFLRDVV GSSAIPCARV 120 PLFADLNCMP SCCDDDDPMD VEAGGASTDD AAVALRIGLP AAPVMNGCGG TEADLLSGLS 180 GRACGGMEPE EDEDECKMDT GAGDGDEVVP LGFASTPIGR LNKGQYWIPT PAQILIGPTQ 240 FSCPVCYKTF NRYNNMQMHM WGHGSQYRKG PESLRGVQPT AMLRLPCYCC APGCRNNIDH 300 PRARPLKDFR TLQTHYKRKH GLKPFLCRKC GKAFAVKGDW RTHEKNCGKL WYCLCGSEFK 360 HKRSLKDHAR AFGHGHGAFG CNVDGADGLE DDDEGAVSEI EQDCAGACRS AR

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MEDPYTSFFK NPYYYYTTSF PAAPPSHLPP PLPPYTTLYP ASVAAAPQYP ACFFQPQPTL  60
PPLHDSPPSP PLREALPLLS QSPTRGASRP HVAADSDDDD DADDFLRDVV GSSAIPCARV  120
PLFADLNCMP SCCDDDDPMD VEAGGASTDD AAVALRIGLP AAPVMNGCGG TEADLLSGLS  180
GRACGGMEPE EDEDECKMDT GAGDGDEVVP LGFASTPIGR LNKGQYWIPT PAQILIGPTQ  240
FSCPVCYKTF NRYNNMQMHM WGHGSQYRKG PESLRGVQPT AMLRLPCYCC APGCRNNIDH  300
PRARPLKDFR TLQTHYKRKH GLKPFLCRKC GKAFAVKGDW RTHEKNCGKL WYCLCGSEFK  360
HKRSLKDHAR AFGHGHGAFG CNVDGADGLE DDDEGAVSEI EQDCAGACRS AR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do002437.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821697.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-118	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1E5V5R3	0.0	A0A1E5V5R3_9POAL; Zinc finger protein WIP2
STRING	Pavir.Fa00506.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-110	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]