PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002424.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TALE
Protein Properties Length: 598aa    MW: 63605.5 Da    PI: 6.6879
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002424.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.4e-093533901954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Do002424.1 353 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 390
                 664459******************************88 PP
2BELL86.43.3e-28217285472
        BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 elq+ k kL  +leeVd+rY++y+eq++ +++ Feavag  +a+ Yt+lA+++iSrhFr+L+d i+ q+
  Do002424.1 217 ELQRLKDKLYIMLEEVDRRYRRYCEQMRSLAGGFEAVAGDRAAAAYTALASRTISRHFRSLRDGIVAQL 285
                 89999*************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.5E-48141283IPR006563POX domain
PfamPF075263.7E-44147281IPR006563POX domain
PROSITE profilePS5007112.05331394IPR001356Homeobox domain
SMARTSM003896.6E-9334398IPR001356Homeobox domain
CDDcd000863.73E-12334395No hitNo description
SuperFamilySSF466892.01E-17335401IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-28337400IPR009057Homeodomain-like
PfamPF059207.9E-18351390IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MAHDPSLGFA DYFAAAADAT AMGEGAPELF GLHADMDFLA MRGGLAAMPG AAHGHGHSKA  60
VLHDAGPDGG STNAATMQFL SAGHQQQHPS QAPLSLSLCR SDGGGVGVTL HEHLGGSSRH  120
HQQPAAWMQH DYSAATQGQQ HAAAWHLRSS RFLLPAQQLL QEFCSLPVDS TANNKSAKQA  180
ATAKPSSQQE DGGGGEGSSS SASWAPSPQI QAMDALELQR LKDKLYIMLE EVDRRYRRYC  240
EQMRSLAGGF EAVAGDRAAA AYTALASRTI SRHFRSLRDG IVAQLQAARK ALGEKDVGVP  300
GMTRGDTPRL RVLDQCIRQQ KALTQAGMME SHPWRPQRGL PERAVTILRA WLFEHFLHPY  360
PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEMY VEEMKDGQDD GGSGGQQSIN  420
PNPSSSHASE AHGGVGHEAA DGGENGVDRK PTRAQLMHDA GSLASVVNIG GVSRLENFGI  480
MDHLDFDAYG GDGDQQQHGG FGGVSLTLGL QQHDSHDGGV NIAFGAPPPA HHHGSAAGYL  540
FATTAGHQQM DGGVNPGHGH HVVQFGAAVG IDGEATHAGQ EHYRSLGAGF HLLRDLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-17340397158Homeobox protein Meis1
4xrs_B4e-17340397158Homeobox protein Meis1
5bng_A4e-17340398159Homeobox protein Meis2
5bng_B4e-17340398159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002424.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9579620.0EU957962.1 Zea mays clone 1638491 BEL1-related homeotic protein 14 mRNA, complete cds.
GenBankEU9579800.0EU957980.1 Zea mays clone 1639087 BEL1-related homeotic protein 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985907.10.0homeobox protein BEL1 homolog
RefseqXP_012698473.10.0homeobox protein BEL1 homolog
RefseqXP_012698474.10.0homeobox protein BEL1 homolog
TrEMBLA0A1E5UVC10.0A0A1E5UVC1_9POAL; Homeobox protein BEL1-like protein
STRINGSi034720m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-82TALE family protein