PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002406.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 435aa    MW: 45704.1 Da    PI: 7.9456
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002406.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09289336455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Do002406.1 289 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 336
                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.68E-10283340No hitNo description
SuperFamilySSF474591.18E-16283354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256285335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-17287353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6289336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MNCGPPDQLP PASAPSCFLN LNWDQSMAAA AAGDHLDPAL SSMVSSPASN STAAAATDGL  60
ALHGISPQPQ YGGTPLSSPP KLNLSMMGQF HHYPTPQVGG AGPGGLPILE NLMPMGHLDQ  120
FLADPGFAER AARLSSFDGR PGGSGYGGAV AGQFGLPDAC PVGALNELEL GNGRDESSVS  180
DPASASAEMA LKGPSDGNAK KRKASGKGKG KDGPGSTAAK DLAKEESSGK RCKSADESNG  240
AEDNSTKGKA AQSNSESGGK KQGKDASKPP EPPKDYIHVR ARRGEATDSH SLAERVRREK  300
ISQRMKLLQD LVPGCNKVVG KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PQLDFNNLPN  360
LLPKDMNSQH PFLNGVSDAA SQVGTFWQDD LQSVVHMDIG QSQEIAATSS NSYNAVLPTS  420
GKHARFRFRL RRALR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002406.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971039.10.0transcription factor bHLH77
SwissprotQ9FJL42e-59BH078_ARATH; Transcription factor bHLH78
TrEMBLA0A1E5V5W50.0A0A1E5V5W5_9POAL; Transcription factor bHLH77
STRINGSi001242m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.17e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]