PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do002362.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 308aa MW: 33731.8 Da PI: 9.0291

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do002362.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.4	1.1e-52	19	151	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhP+dee++++yL +kv ++ +++ +i e+d++k+ePw+Lp k+k +ekewyfF ++d+ky+tg r+nrat++gyWkatgkdke+++++ ++ Do002362.1 19 LPPGFRFHPRDEEIITFYLMPKVLQRGFTC-AAIGEADLNKTEPWELPGKAKMGEKEWYFFYRKDRKYPTGIRANRATEAGYWKATGKDKEIYRATASA 116 79************************99.88***********99999*************************************84444 PP NAM 100 .....vglkktLvfykgrapkgektdWvmheyrle 129 +g+kktLvfykgrap+gekt+Wvmhe+rle Do002362.1 117 alpmlIGMKKTLVFYKGRAPRGEKTNWVMHEFRLE 151 67888*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-60	13	187	IPR003441	NAC domain
PROSITE profile	PS51005	56.416	19	187	IPR003441	NAC domain
Pfam	PF02365	4.1E-27	20	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MGDQQQQQQG MSVGDSLELP PGFRFHPRDE EIITFYLMPK VLQRGFTCAA IGEADLNKTE 60 PWELPGKAKM GEKEWYFFYR KDRKYPTGIR ANRATEAGYW KATGKDKEIY RATASAALPM 120 LIGMKKTLVF YKGRAPRGEK TNWVMHEFRL EGSGKLPCPT SSSTSTAAMK SLSISKDEWV 180 VCRVFHKTTR IKKEHVHAPS SYTMAMASGD IDQSTIPMPI SMQFPMLQDF TMDPTASYYS 240 IASGGSSSMP PVMPPMAGMG NAGLPANGAL FGNLMAPALP VSFYPQMGIG ACATGIDGFM 300 ATPESGPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-48	17	193	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-48	17	193	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-48	17	193	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-48	17	193	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-48	17	193	18	174	NAC domain-containing protein 19
3swm_B	4e-48	17	193	18	174	NAC domain-containing protein 19
3swm_C	4e-48	17	193	18	174	NAC domain-containing protein 19
3swm_D	4e-48	17	193	18	174	NAC domain-containing protein 19
3swp_A	4e-48	17	193	18	174	NAC domain-containing protein 19
3swp_B	4e-48	17	193	18	174	NAC domain-containing protein 19
3swp_C	4e-48	17	193	18	174	NAC domain-containing protein 19
3swp_D	4e-48	17	193	18	174	NAC domain-containing protein 19
4dul_A	4e-48	17	193	15	171	NAC domain-containing protein 19
4dul_B	4e-48	17	193	15	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do002362.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801540.1	1e-168	NAC domain-containing protein 79-like
Swissprot	Q9FLR3	1e-75	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A1E5V4C4	0.0	A0A1E5V4C4_9POAL; NAC domain-containing protein 79
STRING	Pavir.Bb02033.1.p	1e-152	(Panicum virgatum)
STRING	Si030284m	1e-151	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	5e-77	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]