PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002329.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 472aa    MW: 50224.1 Da    PI: 8.054
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002329.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-165498147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++++++a +++G   W++I +++g ++t+ q++s+ qk+
       Do002329.1 54 REKWTEDEHKRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 98
                     789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.44E-1548102IPR009057Homeodomain-like
PROSITE profilePS5129419.19149103IPR017930Myb domain
TIGRFAMsTIGR015577.5E-1652101IPR006447Myb domain, plants
SMARTSM007172.0E-1253101IPR001005SANT/Myb domain
PfamPF002492.5E-145497IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-95494IPR009057Homeodomain-like
CDDcd001679.65E-105699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
ENQMATDEIA VAVRAGGEPA VDHRKDPLDP CDMDLSGEEH LPKARKPYTI TKQREKWTED  60
EHKRFLEALQ LHGRAWRRIQ EHIGTKTAVQ IRSHAQKFFT KVVRESSGSN SAVGAAPAIQ  120
IPPPRPKRKP AHPYPRKVDS AAKKHAPAFK QLEKPPLRMQ SLPDQDDGSP TSVLTTARTV  180
VRAEALGSVF ANSSSGSRSP APSATGSDEH GNGASSIDRE DGCASPSVAT AELATRTANA  240
KVFGDAKEVS CIGTDAPVFK LFGKVVVKDS YEHLHNGCGL KTDASPASVA QATRNAIPFG  300
AAQGSSWNPW PSSMQQLMYF VPQADGFTAQ SVVPWLAYNG SLPCALFYPQ AVPSTQHHQQ  360
QPLEPLDHKR MQREGSLTGS NTASSAVPAA SAVQNSDPAE SHGPGHVDAS ESDAALAAAA  420
AAGVPRLTKC ASSASFSRRG FVPYKRCAAE SEAPRPVAAG EEADGELTRL CL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002329.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953478.10.0protein REVEILLE 2 isoform X2
TrEMBLA0A1E5VGC70.0A0A1E5VGC7_9POAL; Protein LHY (Fragment)
STRINGSi017289m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.34e-35MYB_related family protein