PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002300.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 508aa    MW: 54410 Da    PI: 4.9698
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002300.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.52.2e-22101431128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkevlsk. 95 
                 lppG+ F P+de  v +yL +++ g +l+++  + + d +++ Pw+L  + +++++e +fF++ + +  +g+r++r  +  g W+  +t  + +   + 
  Do002300.1  10 LPPGILFAPEDELAVEYYLLPRLLGWQLQIDGLVLDDDPLSASPWELL-ERNGRKEEAFFFAEGQARCGKGTRQKRtCAGGGWWEgqKTCAEGDA--Tp 105
                 79****************************99999************7.456678899******************5555667763323223332..13 PP

         NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ + + kk L f+ g + k  +t Wvmhey++
  Do002300.1 106 vpgggGNVAAWRKKALNFHGGCDGKKGSTGWVMHEYAV 143
                 356566666999*******99888888*********86 PP
2NAM75.51.3e-231803111128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dkevlsk. 95 
                 lp+Gf F P+d ++v +yL +++ g++l+l+  i + d +++ Pw+L +  ++ +++ +fF+  + k+++g+r++r  +  g+W+   k  d e l+  
  Do002300.1 180 LPAGFIFAPEDGDVVAHYLLPRILGQPLPLDGLILDDDPLSARPWELLQ-RNGCKDDAFFFALGQAKSSKGSRQKRtCAGGGFWNGERKcaDGEKLRVp 277
                 799***************************999**************74.34556799******************77789***976663333322225 PP

         NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + e+ + kk+L f +g ++   +t Wvmhey++
  Do002300.1 278 gpgGAEVAWRKKSLSFQEGGEKG--STGWVMHEYAI 311
                 7777777999******9887766..8********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-304161IPR003441NAC domain
PROSITE profilePS5100528.02310162IPR003441NAC domain
PfamPF023651.5E-1311142IPR003441NAC domain
SuperFamilySSF1019411.57E-30173330IPR003441NAC domain
PROSITE profilePS5100528.761180330IPR003441NAC domain
PfamPF023657.3E-15181310IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MAAAACAAGL PPGILFAPED ELAVEYYLLP RLLGWQLQID GLVLDDDPLS ASPWELLERN  60
GRKEEAFFFA EGQARCGKGT RQKRTCAGGG WWEGQKTCAE GDATPVPGGG GNVAAWRKKA  120
LNFHGGCDGK KGSTGWVMHE YAVTAPEDLA RSPLRLYHIR RSSYGRKQNG GMEVPRALGL  180
PAGFIFAPED GDVVAHYLLP RILGQPLPLD GLILDDDPLS ARPWELLQRN GCKDDAFFFA  240
LGQAKSSKGS RQKRTCAGGG FWNGERKCAD GEKLRVPGPG GAEVAWRKKS LSFQEGGEKG  300
STGWVMHEYA ITAPDHLADS QLRLYRIRFS GHGKKRKRGD EDPCADEAAP TAVRLRVAED  360
ALLDFSTSQP STEPICSSSV VTTDADQHAT AVTVPANQDF TPGIAVGTSW DNFDTSWDNF  420
DIDELLRSIA DSPSTDPCVL PPVTDPGACL DADAASSSFF SQTVAAASPY NGVGAGLVAP  480
SAPAMYRGCM EPADSFFFTV PNQSYAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332338GKKRKRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813463.10.0uncharacterized protein LOC112890817
TrEMBLA0A1E5VNS90.0A0A1E5VNS9_9POAL; Uncharacterized protein
STRINGSi019248m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.12e-13NAC family protein