PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do002294.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 504aa MW: 54225 Da PI: 6.2955

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do002294.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	70.6	4.2e-22	11	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkevlsk. 95 lppG+ F P+de v +yL +++ g +l+++ i + d +++ P++L + +++++e +fF++ + + +g+r++r + g W+ +t +++ k Do002294.1 11 LPPGILFAPEDEVAVGHYLLPRLLGWQLPIDGLILNDDPLSAPPQELL-ERNGRKEEAFFFAEGQARCGKGTRQKRtCAGGGWWEgqKTSAERD---Kl 105 79**************************999**********7.456678899**************445566665323444444...23 PP NAM 96 ......kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++e+ + kk L f+ g k +t Wvmhey++ Do002294.1 106 ripgggGKEAAWRKKALNFHcgGGAGGKKGSTGWVMHEYSV 146 4589888888******44334444458******86 PP
2	NAM	77.3	3.4e-24	183	314	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkevlsk. 95 lppGf F P+d ++v +yL +++ g++l+l+ i + d +++ Pw+L + ++ +++ +fF+ + k+++g+r++r + g+W+ t d + l+ Do002294.1 183 LPPGFLFAPEDGDVVAHYLLRRILGQPLPLDGLILDDDPLSARPWELLE-RNGCKDDAFFFAFGQAKSSKGSRQKRtCAGGGFWNgeRTCADGKKLRVp 280 79**************************999**********73.34556799**************77789944444444444435 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 + e+ + kk+L f + + +kg +t Wvmhey++ Do002294.1 281 glgGAEVAWRKKSLSFQE-DGEKG-STGWVMHEYAI 314 7877788999***84.44454.8******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-28	4	164	IPR003441	NAC domain
PROSITE profile	PS51005	26.384	11	165	IPR003441	NAC domain
Pfam	PF02365	1.2E-13	12	146	IPR003441	NAC domain
SuperFamily	SSF101941	2.48E-31	177	333	IPR003441	NAC domain
PROSITE profile	PS51005	29.787	183	333	IPR003441	NAC domain
Pfam	PF02365	1.1E-15	184	313	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MAAAAACAAG LPPGILFAPE DEVAVGHYLL PRLLGWQLPI DGLILNDDPL SAPPQELLER 60 NGRKEEAFFF AEGQARCGKG TRQKRTCAGG GWWEGQKTSA ERDKLRIPGG GGKEAAWRKK 120 ALNFHCGGGA GGKKGSTGWV MHEYSVTAPE DLARSPLRLY HIRLSSFGRK QIGGMEVPRA 180 LGLPPGFLFA PEDGDVVAHY LLRRILGQPL PLDGLILDDD PLSARPWELL ERNGCKDDAF 240 FFAFGQAKSS KGSRQKRTCA GGGFWNGERT CADGKKLRVP GLGGAEVAWR KKSLSFQEDG 300 EKGSTGWVMH EYAITAPDHL ADSQLRLYRI RFSGHGKKRK RGDEDPCIDE AAPTAARRRV 360 AEDALLDIST SQPSTQPICS SSMVITDADQ HTTPGTVPAN QDFTSGIAVD TSWDNFDIDE 420 LLRSIADWPS TDLCVLAAGT DQGAHLDADA ASSSFFSQTV AAASQYNGVG IGLLTPSAPA 480 LYHGCMEPAD SFFFTMPNQS YAAC

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MAAAAACAAG LPPGILFAPE DEVAVGHYLL PRLLGWQLPI DGLILNDDPL SAPPQELLER  60
NGRKEEAFFF AEGQARCGKG TRQKRTCAGG GWWEGQKTSA ERDKLRIPGG GGKEAAWRKK  120
ALNFHCGGGA GGKKGSTGWV MHEYSVTAPE DLARSPLRLY HIRLSSFGRK QIGGMEVPRA  180
LGLPPGFLFA PEDGDVVAHY LLRRILGQPL PLDGLILDDD PLSARPWELL ERNGCKDDAF  240
FFAFGQAKSS KGSRQKRTCA GGGFWNGERT CADGKKLRVP GLGGAEVAWR KKSLSFQEDG  300
EKGSTGWVMH EYAITAPDHL ADSQLRLYRI RFSGHGKKRK RGDEDPCIDE AAPTAARRRV  360
AEDALLDIST SQPSTQPICS SSMVITDADQ HTTPGTVPAN QDFTSGIAVD TSWDNFDIDE  420
LLRSIADWPS TDLCVLAAGT DQGAHLDADA ASSSFFSQTV AAASQYNGVG IGLLTPSAPA  480
LYHGCMEPAD SFFFTMPNQS YAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	335	341	GKKRKRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do002294.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813463.1	0.0	uncharacterized protein LOC112890817
TrEMBL	A0A1E5VNP1	0.0	A0A1E5VNP1_9POAL; Uncharacterized protein
STRING	Si019248m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP802	22	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	9e-12	NAC family protein