PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002241.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | AP2 | ||||||||
Protein Properties | Length: 450aa MW: 48238.7 Da PI: 5.3052 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.8e-18 | 15 | 64 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr++k +grWv+eIr p + r++lg+++t+e+Aa a +aa +l+g Do002241.1 15 KYKGVRRRK-WGRWVSEIRLP-----HsrERIWLGTYDTPEKAAMAFDAAYVCLRG 64 8*****998.**********7.....335*************************98 PP | |||||||
2 | AP2 | 26.4 | 1.7e-08 | 273 | 309 | 16 | 55 |
AP2 16 vAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 v+eIr p++ r r++lg+++t+e+Aa+a +aa +l+g Do002241.1 273 VSEIRLPNS---RERIWLGSYDTPEKAARAFDAASVCLRG 309 689999833...5**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-26 | 14 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-30 | 15 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.51E-25 | 15 | 76 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-19 | 15 | 76 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-10 | 15 | 64 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.878 | 15 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-9 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-9 | 38 | 54 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.709 | 258 | 320 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-7 | 269 | 326 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-9 | 273 | 320 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.49E-13 | 273 | 322 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-14 | 273 | 321 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MQPNSGSSPS SGERKYKGVR RRKWGRWVSE IRLPHSRERI WLGTYDTPEK AAMAFDAAYV 60 CLRGPSDADG LNFPDSPPDV GRTSDPEEVY AAAVHHANRA AAAAMLYTMT TEPSSEPTQA 120 HGDGAPVEGS AMPAPALSPL QVSDESFDWL QLLADLPPLY SPPYVGSHAY HPPVLPTAAD 180 VNMEENESGS SPCLWSFDCS GAPSTDDHLP TKPLVEPSSH PAYDSARSHC SRFVSSRHVA 240 VVAAGAATAC AVAVGGDEVQ GRATAQAGRQ PLVSEIRLPN SRERIWLGSY DTPEKAARAF 300 DAASVCLRGP GGGTDGLNFP SSPPTFGRTS DREEVRAAAL WQANQSAATG EEAVTESSPS 360 ANDDGVPTER LATVPVPPDV LQVPPEIFDW SANPPPLTSP PAPTSRRRLR LRRPTTTWRR 420 MRVAGAMSFL ALILVNRDRV VIDPVDNEII |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 22 | KGVRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002241.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966650.1 | 6e-77 | ethylene-responsive transcription factor ERF018 | ||||
TrEMBL | A0A1E5V8Y3 | 0.0 | A0A1E5V8Y3_9POAL; Ethylene-responsive transcription factor ERF017 | ||||
STRING | Si008104m | 3e-75 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74930.1 | 3e-30 | ERF family protein |