PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 280aa MW: 29017.1 Da PI: 6.9412 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9e-19 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +grWv+eIr p++ r r++lg+f+t+e+Aa+a +aa +l+g Do002240.1 31 KYRGVRRRR-WGRWVSEIRRPNS---RERIWLGSFDTPEKAARAFDAALVCLRG 80 8*****777.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-27 | 31 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-31 | 31 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-19 | 31 | 90 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-11 | 31 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.945 | 31 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.65E-13 | 31 | 90 | No hit | No description |
PRINTS | PR00367 | 6.2E-10 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-10 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MPATGSSSST PAREREGARH AYAPSPLGQG KYRGVRRRRW GRWVSEIRRP NSRERIWLGS 60 FDTPEKAARA FDAALVCLRG PGAADGLNFP GSPPNVPRTS DSQEVCAASV SHANHNDDGG 120 APLELVAAVS RANGAVGAAT AAREASSAAT PGVSVESAAV PARPQVYAAA ASHAKQAAAG 180 ASIPTAAAPE AAAMTDPTTA HGRGLPVERV AVPAPLQVSL ERLDWSANLP PLYSPPTVTG 240 SHTYLPILTA AAPPDDLEEN DDHPCNCLWS FDSDGSCSRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 29 | 90 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813238.1 | 2e-69 | ethylene-responsive transcription factor ABI4-like | ||||
TrEMBL | A0A1E5V8Y2 | 0.0 | A0A1E5V8Y2_9POAL; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-22 | ERF family protein |