PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002201.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | E2F/DP | ||||||||
Protein Properties | Length: 438aa MW: 47366.4 Da PI: 4.4294 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 83.3 | 1.9e-26 | 130 | 195 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kfl+ll+ ++ giv+ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg Do002201.1 130 RYDSSLGLLTKKFLNLLKGAPGGIVDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNNIRWKG 195 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.2E-28 | 128 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.77E-16 | 130 | 193 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 8.6E-35 | 130 | 195 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.6E-23 | 132 | 195 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 5.72E-38 | 206 | 294 | No hit | No description |
SuperFamily | SSF144074 | 4.18E-27 | 207 | 291 | No hit | No description |
Pfam | PF16421 | 5.3E-25 | 211 | 294 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MAAAAGGAAG EARARAMLQR HQPFAPPPGE YHNFGAPAVA GEDMVEAVVL RTPLKRKHNR 60 EGNEAAESND WMMSPGYANA GSSPVPTPPS GKGLKTSAKP KASKGQKPCP QTPLNFGSPV 120 NPSTPVGGCR YDSSLGLLTK KFLNLLKGAP GGIVDLNNAA ETLEVQKRRI YDITNVLEGI 180 GLIEKKLKNN IRWKGIDESR PGEVSDDMSI LQSDIEALTL QEQNLDERIS EMRDGLRELT 240 EDENNQKWLY VTEDDIKSLP CFQNQTLIAI KAPHGTTLEV PDPDEDVHLQ LNMKPNIAVL 300 IDCSQFEEMS GMETPPRPAP TISMDSLENP KTPLAAECSK AAGIEPNSIQ GLTLPPDAPS 360 SSQDIGGMMK IVPSELDTDA DYWLLSDTGV SITDMWKTAP AVEWDGIEKF NAEDFLEVST 420 PKQQDKPADV MDGPSCIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 6e-23 | 122 | 196 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002201.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034349 | 0.0 | BT034349.1 Zea mays full-length cDNA clone ZM_BFc0009D23 mRNA, complete cds. | |||
GenBank | BT064435 | 0.0 | BT064435.1 Zea mays full-length cDNA clone ZM_BFc0168K16 mRNA, complete cds. | |||
GenBank | EU965538 | 0.0 | EU965538.1 Zea mays clone 286746 transcription factor E2F2 mRNA, complete cds. | |||
GenBank | EU973980 | 0.0 | EU973980.1 Zea mays clone 425487 transcription factor E2F2 mRNA, complete cds. | |||
GenBank | JX469970 | 0.0 | JX469970.1 Zea mays subsp. mays clone UT3233 E2F-DP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804811.1 | 0.0 | transcription factor E2FA-like isoform X1 | ||||
Swissprot | Q9FNY0 | 1e-100 | E2FA_ARATH; Transcription factor E2FA | ||||
TrEMBL | A0A3L6R6R8 | 0.0 | A0A3L6R6R8_PANMI; Transcription factor E2FA-like isoform X1 | ||||
STRING | Pavir.J28624.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 3e-93 | E2F transcription factor 3 |
Publications ? help Back to Top | |||
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