PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002179.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARF
Protein Properties Length: 652aa    MW: 71131.9 Da    PI: 7.1299
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002179.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.5e-24118219199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +++ +el
  Do002179.1 118 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTEHGEL 212
                 89****************************996555555..8999*********************************************..55999** PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  Do002179.1 213 CVGIRRA 219
                 *****97 PP
2Auxin_resp118.74.6e-39274357183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+++++FevvY+Prast+eFvvk+ +v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Do002179.1 274 AASLAASGKPFEVVYYPRASTPEFVVKATSVQSAMRNQWCPGMRFKMAFETEDSSRISWfMGTIASVQLADPIRWPNSPWRLLQ 357
                 678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-36109221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-29115222IPR015300DNA-binding pseudobarrel domain
CDDcd100173.00E-21117218No hitNo description
PROSITE profilePS5086312.929118220IPR003340B3 DNA binding domain
PfamPF023624.6E-22118219IPR003340B3 DNA binding domain
SMARTSM010198.5E-22118220IPR003340B3 DNA binding domain
PfamPF065074.6E-34274357IPR010525Auxin response factor
PROSITE profilePS5174517.988588652IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MKEAAAEERC LEPQLWHACA GGMVQMPPVH SRVYYFPQGH AEHAHGGGAA DLAAGARGLP  60
SLVLCCVAGV RFLADPETDE VFAKIRLVPV APGEVEAFRE PDELGGDPAD AREKLSSFAK  120
TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGEVWKF RHIYRGTPRR  180
HLLTTGWSTF VNQKKLVAGD SIVFLRTEHG ELCVGIRRAK RVSCGGMECM SGWNAPGYGA  240
FSAFLKDEES KMMKGPGGYM RGRGKVKIAD VVEAASLAAS GKPFEVVYYP RASTPEFVVK  300
ATSVQSAMRN QWCPGMRFKM AFETEDSSRI SWFMGTIASV QLADPIRWPN SPWRLLQVTW  360
DEPDLLQNVK CVNPWLVELV SSIPPIHLGP FSPPRKKLRV PQHPDFPFDS QLLNPIFHGN  420
PLGPSNSPIC CFPDNAPAGI QGARHAQFGL PLTDHQLNKL HLGLFQGGGF NRLDAITPPS  480
RISKGFVITS APVNESVSCL LTIGTPQRTE KSDDRKKPHI MLFGKPILTE QQMNSGGSRE  540
TFSPEVTGNS SSDGNAQKTG NVSDGSGSSI CIGFSSQGRE ASELGLEAGH CKVFMESEDV  600
GRTIDLSVFG SYEELYGQLA DMFGIEKAEI MSHLRYRDAA GAVKHTGEEP FR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-79338243392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002179.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982839.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLA0A1E5UWA30.0A0A1E5UWA3_9POAL; Auxin response factor
STRINGSi034525m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]