PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do002151.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23802.2 Da PI: 4.7112 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.1 | 6.6e-16 | 130 | 181 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++ k+grW A+I + + ++lg+f t+eeAa+a++ a+ +++g Do002151.1 130 SIYRGVTRRQKDGRWQARIGLV-----AetRDIYLGTFKTEEEAAEAYDIAAIEIRG 181 57****************9997.....335*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-18 | 130 | 191 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-9 | 130 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.31E-23 | 130 | 189 | No hit | No description |
PROSITE profile | PS51032 | 18.65 | 131 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-27 | 131 | 195 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-20 | 131 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-6 | 132 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-6 | 171 | 191 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MEEKAAGESG DEGTIERSQS INLNTVPPVA VEARSTQENG QAHGAGVSGT KDSRIWNPEQ 60 SSGADQKLPK CEQVDYESEV EGHENPTEKA ALVTLITQYE KELEDIRDLS REECVTYLRR 120 RSSCFSRGAS IYRGVTRRQK DGRWQARIGL VAETRDIYLG TFKTEEEAAE AYDIAAIEIR 180 GKNAVTNFDR SNYVDKGMHC IEGEGLRLLA SKPE |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 118 | 139 | RRRSSCFSRGASIYRGVTRRQK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do002151.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU957460 | 1e-154 | EU957460.1 Zea mays clone 1593084 protein BABY BOOM 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953856.1 | 2e-78 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | K3YTI5 | 4e-77 | K3YTI5_SETIT; Uncharacterized protein | ||||
STRING | Si017580m | 6e-78 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11888 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37750.1 | 4e-31 | AP2 family protein |