PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002143.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 315aa    MW: 31020.2 Da    PI: 10.0558
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002143.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1302.4e-4058151193
         TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93 
                 aa+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++++ ++
  Do002143.1  58 AAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSFSAPAHLRA 151
                 689*******************************************************************999777777777775555533333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3864152IPR005333Transcription factor, TCP
PROSITE profilePS5136927.86165119IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDVAGDGGGG RRPNFPLQLL EKKEEQPCSS SAAVGTSAGG NGNGSGAAAG GEVQVRKAAP  60
KRSSTKDRHT KVEGRGRRIR MPALCAARVF QLTRELGHKT DGETIEWLLQ QAEPAVIAAT  120
GTGTIPANFT SLNISLRSSG SSFSAPAHLR AALPSPAAAA RFGRADAWDR VVGLGFPSEG  180
PASSSSSPSP GGGGSGESIW TFPQMGSAAA AAAVYRGSVP SGLHFMNFPA PVALLPGQQL  240
GLGPVGSGGG GGGGGGGGEG HMGILAALNA YRTQAATDPA AGQGGGSGGG GGSSGQQQHG  300
GGRGERHESM STSDS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002143.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2017620.0AC201762.5 Zea mays BAC clone CH201-479M22 from chromosome 5, complete sequence.
GenBankAC2151740.0AC215174.5 Zea mays BAC clone CH201-70P8 from chromosome 5, complete sequence.
GenBankKJ7280600.0KJ728060.1 Zea mays clone pUT6206 TCP transcription factor (TCP26) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825808.11e-100transcription factor TCP14-like
TrEMBLA0A1E5UWR30.0A0A1E5UWR3_9POAL; Transcription factor TCP15
STRINGLPERR02G26560.11e-122(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.12e-46TCP family protein