PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002127.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ARF | ||||||||
Protein Properties | Length: 664aa MW: 72342 Da PI: 7.4393 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.7 | 4.4e-23 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++ ++lt+GW+ Fv++++L +gD++vF+++ +++ Do002127.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRXHLLTTGWSTFVNQKKLVAGDSIVFMRT--ENGDX 215 89****************************997556555..8999*********************************************44..66667 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ Do002127.1 216 CVGIRRA 222 ****996 PP | |||||||
2 | Auxin_resp | 113 | 2.9e-37 | 278 | 361 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a ++++FevvY Prast+eF+vk+ v++a+++++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ Do002127.1 278 ASNLAVSGQPFEVVYFPRASTPEFCVKAGAVRAAMRTQWCAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 361 5678899***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-36 | 113 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.5E-28 | 116 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.67E-19 | 120 | 221 | No hit | No description |
Pfam | PF02362 | 3.6E-21 | 121 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.449 | 121 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.6E-20 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.6E-32 | 278 | 361 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.453 | 597 | 664 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MITFVDSATM ERERDSDKGL DPQLWHACAG GMVQMPPVHS KVYYFPQGHA EHAQGPVELP 60 AGRVPALVLC RVAAVRFMAD PDTDEVFAKI RLAPVRPNEP ADADDAIGAA AGAQEDKPTS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYTADPPVQT VLAKDVHGVV WKFRHIYRGT 180 PRXHLLTTGW STFVNQKKLV AGDSIVFMRT ENGDXCVGIR RAKKGGIGGP EFLHQPPLPG 240 GNYGGFSMFL RGEEDSNKMM ATRGKVRVRV RPEEVVEASN LAVSGQPFEV VYFPRASTPE 300 FCVKAGAVRA AMRTQWCAGM RFKMAFETED SSRISWFMGT VSAVQVADPI RWPNSPWRLL 360 QVAWDEPDLL QNVKRVSPWL VELVSNMPAI HLSPFSPPRK KLCVPLYPEL PLEGQFPTPM 420 FHGSPLGRGV APMCYFPDGT PAGIQGARHA QFGISLSDLH LNKLQSSLSP HGLHQLDHGM 480 QPRIAAGLII GHPAARDDIS CLLTIGTPQN KKSDVKKAAA PQLMLFGKPI LTEQQISLGN 540 AAGFPLSAPK KSPSADNAEK TVSNSDVSSP GSNQDGTSSG GAPLCQDKKA LDLGLETGHC 600 KVFLQSEDVG RTLDLSDVGS YEELYQRLAD MFGIEKAELM SHVFYRDASG ELKHTTGDKP 660 FRFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-79 | 20 | 382 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002127.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966255.1 | 0.0 | auxin response factor 18 | ||||
Refseq | XP_004966256.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A1E5VAF7 | 0.0 | A0A1E5VAF7_9POAL; Auxin response factor | ||||
STRING | Si005991m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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