PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do001959.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 355aa MW: 39297.1 Da PI: 6.2776

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do001959.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	30.2	1.3e-09	27	139	28	127
NAM 28 leleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgk...rknratk..sgyWkatgkdkevlskkgelvglkktLvfy.. 109 ++ + i++vd++++ P+dL + + ++ ++ wy++++r+ k+ +gk +++ra++ + W+a + k+v++ +g + + L + Do001959.1 27 VDS-RYIHRVDVCSAAPEDLVAdlqpvpgtgvADDGYSNIWYYYCPRKFKNGQGKasgHRQRAIAggDTCWHAETRPKPVKDLDG---ATFRNLSYGrk 121 444.67************755677787653222244589***9999765444444544422667******99444...45577888744 PP NAM 110 kgrapkgektdWvmheyr 127 +g++++ ++ W+m ey Do001959.1 122 DGSSRSFNRMGWCMTEYD 139 57888889*******5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	12.521	1	158	IPR003441	NAC domain
SuperFamily	SSF101941	5.36E-14	23	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MATEDPAPRT SDDASIALLR GLRAGAVDSR YIHRVDVCSA APEDLVADLQ PVPGTGVADD 60 GYSNIWYYYC PRKFKNGQGK ASGHRQRAIA GGDTCWHAET RPKPVKDLDG ATFRNLSYGR 120 KDGSSRSFNR MGWCMTEYDD KEEGGGGGDH VLCKIHRSSS SLARGKLKPS SSSTRPASSK 180 QTAQTSSGSK RKTTSDDHPQ APPNKIAHAQ ACNYACVDQE FCFLDHQVHE TLLTDDQMRM 240 PYCYQVQEPL LTHDQMRMPD CYQVQEPLLT HNQMMMPVEE EQVQQNPLFT MDEWLSVQRC 300 GLFTKNDLLT FQRYCEDGSC SPTTLSIMAQ LMIGCCGPPT ATAPPDAAFF QGLAF

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MATEDPAPRT SDDASIALLR GLRAGAVDSR YIHRVDVCSA APEDLVADLQ PVPGTGVADD  60
GYSNIWYYYC PRKFKNGQGK ASGHRQRAIA GGDTCWHAET RPKPVKDLDG ATFRNLSYGR  120
KDGSSRSFNR MGWCMTEYDD KEEGGGGGDH VLCKIHRSSS SLARGKLKPS SSSTRPASSK  180
QTAQTSSGSK RKTTSDDHPQ APPNKIAHAQ ACNYACVDQE FCFLDHQVHE TLLTDDQMRM  240
PYCYQVQEPL LTHDQMRMPD CYQVQEPLLT HNQMMMPVEE EQVQQNPLFT MDEWLSVQRC  300
GLFTKNDLLT FQRYCEDGSC SPTTLSIMAQ LMIGCCGPPT ATAPPDAAFF QGLAF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do001959.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463549.1	2e-55	uncharacterized protein LOC8079646
TrEMBL	A0A1E5VIV5	0.0	A0A1E5VIV5_9POAL; Uncharacterized protein
STRING	Pavir.Fb02148.1.p	1e-120	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4574	6	32