PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do001904.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | SBP | ||||||||
Protein Properties | Length: 109aa MW: 11884.2 Da PI: 8.3532 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 37.7 | 5.3e-12 | 60 | 109 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHH..HT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevh..skapvvlvsgleqrfCqqCsr 48 +CqvegC +l +akeyhr + + p v+v+g+e+r CqqCsr Do001904.1 60 RCQVEGCGLELDTAKEYHRPPEAPRLRgpHQVPRVVVAGQERRRCQQCSR 109 6******************987776652257899***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.5E-11 | 54 | 109 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 11.956 | 58 | 109 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.49E-11 | 59 | 109 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-7 | 61 | 109 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MEWTAPKPAA LPSSPPLLWD WADHAAARSG SSGDAPVRHG GREREGQRAK GEEGGGAEVR 60 CQVEGCGLEL DTAKEYHRPP EAPRLRGPHQ VPRVVVAGQE RRRCQQCSR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do001904.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805124.1 | 7e-48 | squamosa promoter-binding-like protein 4 | ||||
Swissprot | Q6H509 | 2e-19 | SPL4_ORYSJ; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | A0A1E5W7S7 | 4e-71 | A0A1E5W7S7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab00499.1.p | 3e-47 | (Panicum virgatum) | ||||
STRING | Pavir.J20730.1.p | 4e-49 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6271 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 8e-12 | squamosa promoter binding protein-like 2 |
Publications ? help Back to Top | |||
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