PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001873.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 366aa    MW: 40407 Da    PI: 8.6716
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001873.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.5e-102979146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++rWT eE+  l  +++++G g W+tI +          R+  ++k++w++
       Do001873.1 29 KQRWTSEEEAALRAGIARHGVGKWRTILKDPEfsstlCYRSNVDLKDKWRN 79
                     79****************************999999978**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.2222485IPR017930Myb domain
SuperFamilySSF466897.9E-152685IPR009057Homeodomain-like
SMARTSM007171.2E-62883IPR001005SANT/Myb domain
PfamPF002491.1E-62980IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-132980IPR009057Homeodomain-like
CDDcd116603.03E-203081No hitNo description
Gene3DG3DSA:1.10.10.101.8E-18143217IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.53E-18143223IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.2E-13144209IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.934146214IPR005818Linker histone H1/H5, domain H15
PfamPF005381.4E-10147207IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEPLRYMTKC SSALITLHRR LGLSMGAPKQ RWTSEEEAAL RAGIARHGVG KWRTILKDPE  60
FSSTLCYRSN VDLKDKWRNM NVIVSTSSSR DKGKTAVKKT RTTPKNNDQT MAISTVTSDI  120
DDEIVDEKPI APVPSEAHNT SNPKKSHSRL DNIIMEAIKS LNEPTGSHRT TIANYIEEQY  180
WPPSDFDHLL SAKLKDLATS GKLIKVNRKY RIAPSSPNSE GRSPKMVLLE DVQIEAVKIG  240
SNDSKTLTRS QVDAELARMA TMTAEEASAA AARAVAEAEA IMAEAEAAAR EAEAAEANAQ  300
AAQAFAEAAF LTLKNRSAAK LVIVLVHGSL CYMSYCPFTC RTRFYNLFWL VASGYLKESP  360
EMIEFS
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001873.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620590.0BT062059.1 Zea mays full-length cDNA clone ZM_BFb0211A14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982335.11e-168single myb histone 6 isoform X1
SwissprotC0HIA31e-164SMH6_MAIZE; Single myb histone 6
TrEMBLA0A1E5VMK10.0A0A1E5VMK1_9POAL; Single myb histone 6
STRINGSi036471m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.35e-65telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]