PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001800.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 347aa    MW: 37689.8 Da    PI: 7.3064
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001800.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.22.9e-32203260259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+
  Do001800.1 203 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 260
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-34187262IPR003657WRKY domain
SuperFamilySSF1182906.93E-29195262IPR003657WRKY domain
PROSITE profilePS5081131.066197262IPR003657WRKY domain
SMARTSM007741.6E-37202261IPR003657WRKY domain
PfamPF031062.0E-25203260IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSSGGGGGGG GGDHHGVYYQ HGHGRGDGAD YVFNNNDMES FFFNQPALGV GGGSRTGAAD  60
ELMPPYNSIT DYLQGFLDPS GLARHLDAPC PAEDAQVKHE LSLDVMSHDS QGTSGAAGEG  120
AALLTPNSSV SLSSSDREGE GQPRRCKKGR AKAEDEVAAE GDEKDQEDRE NSTKANKSKK  180
KAEKRKRQPR VAFLTKSEVD HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT PKCGVKKRVE  240
RSYQDPSTVI TTYEGQHTHH SPASLRAGGA HLFMPGAHGL PPHLMAPSGF RPDLMGMMHP  300
NPNMFLPSMP PPQMPTPSPP PPPLQQHHFT DYALLQDLFP STMPNNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-291952631078Probable WRKY transcription factor 4
2lex_A3e-291952631078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7268120.0KJ726812.1 Zea mays clone pUT3168 WRKY transcription factor (WRKY28) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969225.10.0probable WRKY transcription factor 71
TrEMBLA0A1E5UX050.0A0A1E5UX05_9POAL; Putative WRKY transcription factor 71
STRINGSi002019m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.19e-47WRKY DNA-binding protein 71