PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001643.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 367aa    MW: 37905 Da    PI: 7.5346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001643.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.63.3e-06255295954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  Do001643.1 255 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 295
                 599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.65E-10237300No hitNo description
PROSITE profilePS5088814.449246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-12252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-13252305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-10255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDEAFLGACF GQLQCDGVLA AGAGGNTGGA CQVSSNCGAF EGGAGIDSDL LAFLSAGTGD  60
AFDAGLLDAA LAFTRELGDG GAVSNGAMLS SYSGTTGGNI SSGESNNYSG GHDAEVVSPT  120
SIMSPTTAPR PVTHADSSQH ALHVHAKRKV TDEYPTAIAT TTAPPLAPFP RPSDAKRRAS  180
TSISFGQQGA HSARDPTATV YEPDMEAMAQ VKEMIYRAAA MRPVNLGPEV TATAAAEKPR  240
RKNVRISSDP QTVAARLRRE RVSERLRVLQ KLVPGGSKMD TASMLDEAAS YLKFLKSQVQ  300
ALETLGTSST SSTSTSCAAS RSSQHYNYYG SGSSNPGFLG FARRSSNISP AGYVNPNGST  360
NTSSKLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236242EKPRRKN
2237242KPRRKN
3255260RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001643.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554552e-97AK355455.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818336.10.0transcription factor LATE FLOWERING-like
TrEMBLA0A1E5V7Z60.0A0A1E5V7Z6_9POAL; Transcription factor bHLH87
STRINGPavir.Eb02901.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-35bHLH family protein