PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001632.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 359aa    MW: 37989.3 Da    PI: 8.2682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001632.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.7e-14213259455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr+++Pk +      K++Ka+ L  A+ YI++L+
  Do001632.1 213 NHVEAERQRREKLNQRFYALRSVVPKiS------KMDKASLLSDAIAYIQELE 259
                 799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-743139IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.301209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.03E-15212263No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-17212264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-11213259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-16215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAWSETDAGL FAAVLGRDAA HHLATTPPHL DAPAASAAAP AELQARLQHL VKRIGGVWTY  60
GAGGRGCAVL GWGDGHCRDG ARGPHDAAAT GEERSAARKR ALLRLHALYG GGDDDEGADY  120
ALRLDRVTGA EMYFLASIVT GDNWATIPQL GGQAMASSPA AKKEAATPRP PEPXKSIDXT  180
KPPGKAEQTG GGEERRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRSVVPKIS  240
KMDKASLLSD AIAYIQELED RLRGGGATGA AAESPAVEVK AMQDEVVLRV TTPLFAHPVS  300
RVFHAIRDAQ LSVAASEVAV ADDAVTHTLV LRSAGPEQLT AETVLAAMSR GMTSATPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-25207294282Transcription factor MYC2
5gnj_B2e-25207294282Transcription factor MYC2
5gnj_E2e-25207294282Transcription factor MYC2
5gnj_F2e-25207294282Transcription factor MYC2
5gnj_G2e-25207294282Transcription factor MYC2
5gnj_I2e-25207294282Transcription factor MYC2
5gnj_M2e-25207294282Transcription factor MYC2
5gnj_N2e-25207294282Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194202RRPRKRGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001632.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9680150.0EU968015.1 Zea mays clone 312846 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456225.11e-101transcription factor bHLH13
TrEMBLA0A368RA731e-131A0A368RA73_SETIT; Uncharacterized protein
STRINGSi004795m1e-132(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-43ABA-inducible BHLH-type transcription factor