PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do001525.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 381aa MW: 39325.9 Da PI: 5.3964 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.6 | 1.1e-08 | 340 | 376 | 3 | 44 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiL 44 ++h e+Er RRd++N +f Lr +P+ + K + a+ L Do001525.1 340 MSHVEAERSRRDKLNRRFCDLRAAVPTmS------KTDRASLL 376 589************************44......55555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.5 | 337 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-9 | 338 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.11E-7 | 340 | 380 | No hit | No description |
Pfam | PF00010 | 3.7E-6 | 341 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-8 | 341 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MVGRQAAAVR LTTATARHAP ARLMGALRSL DLPVQHACVT RVQGLTVQDV VVDVPAXRWT 60 CRSSTRAQAT GEQLGSSISR GSGSSIVMDR LRSFSIFSVH PVAGGVTGTP IDDDGTIAAA 120 SGSHFYSYGT REAEEAATVL VLAPEQPNRG SQAVAATTGG TATSSAAPPG APSVMAPAEE 180 DHAAPAPAPE DEEDKAATEA EAEQGESISL DEAYALAQRL RAQEPLGGIA FAAGSATANS 240 TTPANTSSAR TREESPAHSP ASSFSLAAGG GHHHHHPVLE FESCDVPELW LEDDDGLDGA 300 AWGDGSSPSA GNNLSDDKSP APAAKRRGRN PGPKTQGPAM SHVEAERSRR DKLNRRFCDL 360 RAAVPTMSKT DRASLLADAT A |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do001525.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5W1X4 | 0.0 | A0A1E5W1X4_9POAL; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 3e-14 | bHLH family protein |