PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do001497.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 325aa MW: 35064 Da PI: 6.5093 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 7.9e-09 | 14 | 47 | 1 | 34 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkg 34 rg+W++eEde+l +v+++G g +W + +++ g + Do001497.1 14 RGPWSPEEDEQLRSYVQRHGIGgNWIALPQKAG-T 47 89******************999**99999988.5 PP | |||||||
2 | Myb_DNA-binding | 34.1 | 6.5e-11 | 125 | 165 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 T++Ed+++ + G++ W+ Ia++++ gR ++++k++w++ Do001497.1 125 YTEQEDQIIRSLYSSIGSR-WSIIASKLP-GRXDNDVKNYWNT 165 69*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.62E-6 | 8 | 45 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.374 | 9 | 116 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.5E-7 | 13 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-6 | 14 | 47 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 15 | 47 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.27E-20 | 102 | 170 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 103 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.292 | 117 | 171 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-10 | 121 | 169 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-21 | 123 | 170 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.7E-10 | 123 | 165 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-7 | 125 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MGRAPCCDKA SVKRGPWSPE EDEQLRSYVQ RHGIGGNWIA LPQKAGTLPV PVSSALDEQH 60 REPDHHALAV IDPGSSDSFE QNLETNKQNL ETNNLASPSG LNRCGKSCRL RWLNYLRPDI 120 KHGGYTEQED QIIRSLYSSI GSRWSIIASK LPGRXDNDVK NYWNTKLKKK AMAAAAFAAP 180 ATPPPAALSP ASSSITSSSG DVRFAGYPQP QAAQHQGQMM RFDAPAPQRR QNTELAPVPP 240 ATVAQLDGSA SGGVWALSAA ALDDVFLPDL IGGGEQLFPY GEFFGGLQDR AQLELSACYF 300 PNMAEMWGAA ASDAKPQQGL CNTLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-18 | 103 | 170 | 37 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-18 | 103 | 170 | 37 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do001497.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679430 | 1e-100 | HF679430.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB24 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961299.1 | 1e-105 | transcription factor RAX2 | ||||
Swissprot | Q9FKL2 | 7e-55 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A1E5W057 | 0.0 | A0A1E5W057_9POAL; Transcription factor MYB36 | ||||
STRING | Si022874m | 1e-104 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 4e-56 | myb domain protein 36 |
Publications ? help Back to Top | |||
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