PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001497.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 325aa    MW: 35064 Da    PI: 6.5093
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001497.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.9e-091447134
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkg 34
                     rg+W++eEde+l  +v+++G g +W + +++ g +
       Do001497.1 14 RGPWSPEEDEQLRSYVQRHGIGgNWIALPQKAG-T 47
                     89******************999**99999988.5 PP

2Myb_DNA-binding34.16.5e-11125165446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       T++Ed+++  +    G++ W+ Ia++++ gR ++++k++w++
       Do001497.1 125 YTEQEDQIIRSLYSSIGSR-WSIIASKLP-GRXDNDVKNYWNT 165
                      69*****************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.62E-6845IPR009057Homeodomain-like
PROSITE profilePS500908.3749116IPR017877Myb-like domain
SMARTSM007175.5E-713118IPR001005SANT/Myb domain
PfamPF002491.0E-61447IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-211547IPR009057Homeodomain-like
SuperFamilySSF466897.27E-20102170IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-21103122IPR009057Homeodomain-like
PROSITE profilePS5129419.292117171IPR017930Myb domain
SMARTSM007171.8E-10121169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-21123170IPR009057Homeodomain-like
PfamPF002497.7E-10123165IPR001005SANT/Myb domain
CDDcd001671.15E-7125167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPE EDEQLRSYVQ RHGIGGNWIA LPQKAGTLPV PVSSALDEQH  60
REPDHHALAV IDPGSSDSFE QNLETNKQNL ETNNLASPSG LNRCGKSCRL RWLNYLRPDI  120
KHGGYTEQED QIIRSLYSSI GSRWSIIASK LPGRXDNDVK NYWNTKLKKK AMAAAAFAAP  180
ATPPPAALSP ASSSITSSSG DVRFAGYPQP QAAQHQGQMM RFDAPAPQRR QNTELAPVPP  240
ATVAQLDGSA SGGVWALSAA ALDDVFLPDL IGGGEQLFPY GEFFGGLQDR AQLELSACYF  300
PNMAEMWGAA ASDAKPQQGL CNTLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-1810317037104C-Myb DNA-Binding Domain
1msf_C1e-1810317037104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001497.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794301e-100HF679430.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB24 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961299.11e-105transcription factor RAX2
SwissprotQ9FKL27e-55MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1E5W0570.0A0A1E5W057_9POAL; Transcription factor MYB36
STRINGSi022874m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-56myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]