PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do001354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 201aa MW: 20849.3 Da PI: 10.7147 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.5 | 4.2e-07 | 24 | 80 | 6 | 53 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as........kapskKlsKaeiLekAveYIks 53 + +Er+RR+++N +++L +l+ +s + + + ++ + Le+A YI++ Do001354.1 24 KTVERNRRNQMNALYSRLDSLVRAgSSpssappavQRGLPAMTRPDRLEEAAAYIRQ 80 679*********************666999999955555559999**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.562 | 18 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-7 | 23 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.25E-7 | 24 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-4 | 25 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MDMPPPPPPF GGPGGAGGGK PDRKTVERNR RNQMNALYSR LDSLVRAGSS PSSAPPAVQR 60 GLPAMTRPDR LEEAAAYIRQ TTERVERLKE RKRELTAARA GSSSQGSGSG SGSSSAAGAT 120 EVEVQHLGSG LHAILVAGAP PSDGASFHRA VRAVEEAGGE VQNAHFSVVG ARAVYTIHTL 180 VAEGGIERVV QRLKAALRGD A |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do001354.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798292.1 | 1e-98 | transcription factor bHLH162-like isoform X1 | ||||
TrEMBL | A0A1E5VEJ3 | 1e-139 | A0A1E5VEJ3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J36523.1.p | 1e-101 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11987 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-11 | bHLH family protein |