PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do001263.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | TCP | ||||||||
Protein Properties | Length: 244aa MW: 26676 Da PI: 6.6758 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.6 | 2.7e-35 | 77 | 174 | 3 | 95 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......kaaksaa 95 ++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl+q+kpai+ l + ++a ++ + + + +++ ss+ + ++++a Do001263.1 77 FRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLTQSKPAIDRLHDAAEPAAASSGPTTVVMRGGEGSSSstccfkD-SREKA 174 689************************************************************666665554445544444333333344431.11111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 33.985 | 78 | 136 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.2E-33 | 78 | 158 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSSWDGYGGQ IFPADMFRHQ ETLEAVFQQA PVTMVAPLRR VADAAGEGEL MMRDAAPVVM 60 VDGGVHAAAA APRRRPFRTD RHSKIRTAQG VRDRRMRLSV GVAREFFALQ DRLGFDKASK 120 TVNWLLTQSK PAIDRLHDAA EPAAASSGPT TVVMRGGEGS SSSTCCFKDS REKATEKGRS 180 RGGRDGPAAL MEEHGGGELD WITSDAAEAV PPQPPQSMDE LEYCYQYYLQ IEEMTRCNNG 240 GVPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-14 | 83 | 136 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 7e-14 | 83 | 136 | 1 | 54 | Putative transcription factor PCF6 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do001263.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961498 | 3e-95 | EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds. | |||
GenBank | KJ727762 | 3e-95 | KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973503.2 | 1e-108 | transcription factor TB1 | ||||
TrEMBL | A0A1E5VGN2 | 1e-180 | A0A1E5VGN2_9POAL; Uncharacterized protein | ||||
STRING | Si015230m | 1e-109 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 1e-24 | TCP family protein |