PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001260.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 372aa    MW: 38466.8 Da    PI: 5.4248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001260.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.23.9e-15144190354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r+h+e+ErrRR+riNs +++Lr+llP+      +K +Ka+ L +++e++k+L
  Do001260.1 144 RSHSEAERRRRQRINSHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 190
                 78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.288141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12144190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14144201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-14144193No hitNo description
SuperFamilySSF474595.76E-15145197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.95E-6243296No hitNo description
Gene3DG3DSA:3.30.70.2607.6E-7243294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MWEGGGVHGS HEALLLQAAG SGAGADYGHA GPVLLPWLGP AAAPGFSYMA PHHQGPPFVG  60
AEAAAAGPFV GFGGGYGEGG VGQLGVFGLE PPLAPPPPNG LLAAAAAPPQ GSRVVSGLLG  120
TLQAELGRMT AKEIMDAKAL AASRSHSEAE RRRRQRINSH LARLRSLLPN TTKTDKASLL  180
AEVIEHVKEL KRQTSAVLGA EEEGEGEEAS AAARRHLLLP TESDELAVDA GEDGEGRLIV  240
RASLCCEDRA GLIPDIARAL AALRVRARRA EIATLGGRVR NVLLITTTAD DDEEEEEQGQ  300
GGDDGGDDAD ADGCGPASHY HRRHELVASI QEALRGVMDR KTASSDNTSS SSGGSGSIKR  360
QRMSGAHEQG SL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096161e-154AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820189.11e-153transcription factor bHLH30-like
TrEMBLA0A1E5VGR10.0A0A1E5VGR1_9POAL; Transcription factor bHLH30
STRINGSi013911m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-48bHLH family protein