PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do001246.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GeBP

Protein Properties

Length: 474aa MW: 51334.8 Da PI: 10.226

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do001246.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	84.1	1.9e-26	224	321	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++ r+w eDe+++L +li+++ak+g + +d+ ++++++++++ +++s +ql++K+rrLK+K k v++ak+g++p++ +e d++++elskk+W+ Do001246.1 224 RPPRVWAPEDEVTILTALIEYRAKKGRlpASIQDTGKLHSQISGRLTANASVTQLSDKVRRLKHKCKLLVTRAKNGRDPDLPTEFDRNVYELSKKVWE 321 578**********************777888**************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.1E-25	226	321	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MSPERSAAAT AETGAGSDAS DGKAGATRHS NSPSPIPSGS RSRSRSRSKT PPPDVRPSAA 60 ALASTPTAGA DAGAGGRASS PRRRDGEDPP RDHLDSDADT GRRAPSPRRR GERSPSSHSD 120 SDAEADAVAT AGRASSPRRK SELTPLLDLD SGSDTATAPS EDDGDASPSP RACPSSHIKT 180 SSVKPISTRP MDAPLRADAA ASSEPRFKRR HSSPGRGTPE YQKRPPRVWA PEDEVTILTA 240 LIEYRAKKGR LPASIQDTGK LHSQISGRLT ANASVTQLSD KVRRLKHKCK LLVTRAKNGR 300 DPDLPTEFDR NVYELSKKVW EFKSKKGTSL ANEDIGDADS DEEQEIKERY EDMEKEKNRE 360 HTGKKPKTFR FENGNGNAIA TVGRASHGNG SGRDDAEKGK QMYPYLWAAV EELSKDHPSG 420 QIFRKAFGVL EKSKARAMEE KLRKHRMSVV RQQLHRMDLT KESVGMVLDA LDGA

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MSPERSAAAT AETGAGSDAS DGKAGATRHS NSPSPIPSGS RSRSRSRSKT PPPDVRPSAA  60
ALASTPTAGA DAGAGGRASS PRRRDGEDPP RDHLDSDADT GRRAPSPRRR GERSPSSHSD  120
SDAEADAVAT AGRASSPRRK SELTPLLDLD SGSDTATAPS EDDGDASPSP RACPSSHIKT  180
SSVKPISTRP MDAPLRADAA ASSEPRFKRR HSSPGRGTPE YQKRPPRVWA PEDEVTILTA  240
LIEYRAKKGR LPASIQDTGK LHSQISGRLT ANASVTQLSD KVRRLKHKCK LLVTRAKNGR  300
DPDLPTEFDR NVYELSKKVW EFKSKKGTSL ANEDIGDADS DEEQEIKERY EDMEKEKNRE  360
HTGKKPKTFR FENGNGNAIA TVGRASHGNG SGRDDAEKGK QMYPYLWAAV EELSKDHPSG  420
QIFRKAFGVL EKSKARAMEE KLRKHRMSVV RQQLHRMDLT KESVGMVLDA LDGA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do001246.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821021.1	0.0	serine/arginine repetitive matrix protein 1-like
TrEMBL	A0A1E5W8D3	0.0	A0A1E5W8D3_9POAL; Uncharacterized protein
STRING	Pavir.Fa00747.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2671	35	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	2e-12	DNA-binding storekeeper protein-related transcriptional regulator