PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do001229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 188aa MW: 21235.9 Da PI: 8.4095 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.9 | 3.7e-11 | 8 | 55 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT+ Ed+ + +a + + ++ +W+ +ar++g +++ ++++ ++qk+ Do001229.1 8 EWTKKEDKMFERALAVYDTDtpdRWHNVARYIGGTKSVEEVRRHYQKL 55 7*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 25.6 | 2.8e-08 | 106 | 150 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+ +l+ +a + + + +W+ Iar +g g+++++++ ++ Do001229.1 106 QWTAKQNKLFEQALAVYDRDapdRWHNIARAVG-GKSAEEVRRYYE 150 7*****************99*************.**********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.471 | 4 | 60 | IPR017884 | SANT domain |
SMART | SM00717 | 3.8E-11 | 5 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.09E-12 | 7 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-9 | 8 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.12E-9 | 8 | 56 | No hit | No description |
PROSITE profile | PS51293 | 9.927 | 102 | 157 | IPR017884 | SANT domain |
SMART | SM00717 | 5.0E-7 | 103 | 155 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-6 | 105 | 150 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-6 | 106 | 159 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.58E-13 | 106 | 160 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.76E-7 | 107 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MASNSSSEWT KKEDKMFERA LAVYDTDTPD RWHNVARYIG GTKSVEEVRR HYQKLVVDIA 60 QIESEGVPFH WYASAPSPST LQRGTVIISL EQKIRASMSM SSPRAQWTAK QNKLFEQALA 120 VYDRDAPDRW HNIARAVGGK SAEEVRRYYE LLVQDVNHIE AGKVPFPAYR CPGGAPGNMA 180 MGGYEADR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-29 | 1 | 174 | 1 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do001229.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969542 | 3e-79 | EU969542.1 Zea mays clone 331755 DNA binding protein mRNA, complete cds. | |||
GenBank | KJ728409 | 3e-79 | KJ728409.1 Zea mays clone pUT6714 MYB-related transcription factor (MYBR41) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151113.1 | 3e-47 | uncharacterized protein LOC100284746 | ||||
Refseq | XP_004961116.1 | 3e-47 | protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 9e-32 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A1E5UUT9 | 1e-138 | A0A1E5UUT9_9POAL; Protein RADIALIS-like 3 | ||||
STRING | Si023770m | 1e-46 | (Setaria italica) | ||||
STRING | GRMZM2G150260_P01 | 1e-46 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-32 | RAD-like 1 |
Publications ? help Back to Top | |||
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