PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001225.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 489aa    MW: 53100.2 Da    PI: 8.5774
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001225.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.2e-161259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lv ++ q+G g+W+  ar  g++R +k+c++rw++yl
       Do001225.1 12 KGPWTMEEDLILVGYISQHGEGSWDNLARAAGLNRNGKSCRLRWLNYL 59
                     79********************************************97 PP
2Myb_DNA-binding45.41.9e-1466108246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g  T+ Ed ++ ++ ++lG++ W++Ia++++ gRt++++k++w++
       Do001225.1  66 GGITAAEDAIIRELQARLGNR-WSKIAEHLP-GRTDNEVKNYWRT 108
                      556999***************.*********.***********96 PP
3Myb_DNA-binding52.61.1e-16273320148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT eEd++lv ++ q+G g+W++ ar  g++R +k+c++rw++yl
       Do001225.1 273 KGPWTLEEDLILVGYISQHGEGSWDSLARAAGLNRNGKSCRLRWLNYL 320
                      79********************************************97 PP
4Myb_DNA-binding44.82.9e-14328369346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + T+ Ed  + ++++ lG++ W++I+++++ gRt++++k++w++
       Do001225.1 328 SITAAEDAAIRELHATLGNK-WSKISKHLP-GRTDNEIKNYWRT 369
                      66999***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.177763IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-20862IPR009057Homeodomain-like
SuperFamilySSF466895.86E-2910106IPR009057Homeodomain-like
SMARTSM007178.9E-121161IPR001005SANT/Myb domain
PfamPF002491.1E-131259IPR001005SANT/Myb domain
CDDcd001678.39E-91459No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2263113IPR009057Homeodomain-like
SMARTSM007171.2E-1364112IPR001005SANT/Myb domain
PROSITE profilePS5129418.29264114IPR017930Myb domain
PfamPF002499.0E-1368108IPR001005SANT/Myb domain
CDDcd001675.94E-1169108No hitNo description
PROSITE profilePS5129423.249268324IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-19268323IPR009057Homeodomain-like
SuperFamilySSF466891.8E-29271367IPR009057Homeodomain-like
SMARTSM007177.6E-13272322IPR001005SANT/Myb domain
PfamPF002492.3E-14273320IPR001005SANT/Myb domain
CDDcd001671.68E-9275320No hitNo description
Gene3DG3DSA:1.10.10.603.6E-23324374IPR009057Homeodomain-like
PROSITE profilePS5129418.627325375IPR017930Myb domain
SMARTSM007171.6E-13325373IPR001005SANT/Myb domain
PfamPF002497.4E-13327369IPR001005SANT/Myb domain
CDDcd001679.56E-11330369No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MCGRAGEPAV RKGPWTMEED LILVGYISQH GEGSWDNLAR AAGLNRNGKS CRLRWLNYLR  60
PGVRRGGITA AEDAIIRELQ ARLGNRWSKI AEHLPGRTDN EVKNYWRTRV QKRRPANTQP  120
QSYRAPATTE ATAITSEGAS SSASASHDSS AAGGDYWCTR PNPDRQACYH QYKKAVAVSD  180
GASAASLQAS STAGDCCYME PINADPKEAY YSKKTATAAA VGLDSESSPT AGDGYTYPYY  240
SELSSVADGV KMEMATRVAM MCDRAGDQPA VRKGPWTLEE DLILVGYISQ HGEGSWDSLA  300
RAAGLNRNGK SCRLRWLNYL RPGVRHGSIT AAEDAAIREL HATLGNKWSK ISKHLPGRTD  360
NEIKNYWRTR IQKKPAAAKE RQQPPSAVSE KAAMTMMAAA TTAAFVISSE GAPFAPTTSQ  420
DSPTAAGDWR MQQASCPYYS ELLSSVAGHG ETVVGLDALT ADFSSSQFSD RFWSAVDNFW  480
ETKPVAGAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-24837423127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281931e-123KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815397.11e-114transcription factor MYB57-like
SwissprotQ9SSA13e-53MYB57_ARATH; Transcription factor MYB57
TrEMBLA0A1E5UUF70.0A0A1E5UUF7_9POAL; Transcription factor MYB21
STRINGSi003841m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132402633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-53myb domain protein 21