PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do001180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GATA | ||||||||
Protein Properties | Length: 198aa MW: 22179 Da PI: 9.8637 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.3 | 2.8e-20 | 31 | 65 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++ Do001180.1 31 CADCHTTKTPLWRGGPEGPKSLCNACGIRYRKRRR 65 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.442 | 25 | 61 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.5E-18 | 25 | 75 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.42E-13 | 27 | 64 | No hit | No description |
CDD | cd00202 | 2.23E-14 | 30 | 66 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.8E-16 | 30 | 65 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 31 | 56 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.5E-18 | 31 | 65 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGMEMEMETE TDPNTSPSPD DPTASGEAKA CADCHTTKTP LWRGGPEGPK SLCNACGIRY 60 RKRRRQALGL DAAAAAADPQ QDQQQTKKKA ADPQQDHQQQ KKADPQEDQQ QPRKADPQED 120 QQQPRKKAAS SSTNNKKEKE KDKKKKDRQV TVELRVVGFG KEVMLKQRRQ MRRKKCMSEE 180 ERAAVLLMAL SSGVIYAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 64 | RKRRR |
2 | 124 | 145 | RKKAASSSTNNKKEKEKDKKKK |
3 | 136 | 145 | KEKEKDKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do001180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU967444 | 5e-56 | EU967444.1 Zea mays clone 303140 GATA zinc finger family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818098.1 | 1e-81 | GATA transcription factor 15-like | ||||
TrEMBL | A0A1E5WHI6 | 1e-142 | A0A1E5WHI6_9POAL; Uncharacterized protein | ||||
STRING | Si002983m | 2e-78 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2418 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 7e-19 | GATA transcription factor 15 |