PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001164.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 278aa    MW: 29793.5 Da    PI: 10.7642
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001164.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix31.25.6e-10571312086
    trihelix  20 rlrrgklkkplWeevskkm......rergferspkqCkekwenlnkryk.kikegekkr.tsessstcpyfdqle 86 
                 ++++g     +We+v++++      r +g  +s +q k+k++nl+kryk +++++++ r +s + s++p+f+++e
  Do001164.1  57 SSSSGGTSVRDWEDVAAAVseqhldRYGGGGKSVEQYKNKIDNLKKRYKvECQRIAEARsSSSTASHWPWFKKME 131
                 45566678899********888887777888899***************44555555554577889********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-1066131No hitNo description
Gene3DG3DSA:3.40.1160.105.3E-17133268IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.24E-12173268IPR001048Aspartate/glutamate/uridylate kinase
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSANTAPASR AVSPRAARRR EAAAAPRGPA RTAGRTGRSG ARGPSPASST RTPSGSSSSS  60
GGTSVRDWED VAAAVSEQHL DRYGGGGKSV EQYKNKIDNL KKRYKVECQR IAEARSSSST  120
ASHWPWFKKM EYIVGSAKSI ARGRRKKNIF NNTYSLCDYA NCKRNSSGKP LGCSGLLLQT  180
SLEKIGIETR VQTSLLMQDA AEPYIRQRAI RHLEKGRVVI FGGIGASVEN LLFTTDTAAA  240
LRASENALLK GITGDHLYGC SPGSNGNAAS EHVSYRKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z9d_A1e-1917326984181uridylate kinase
1z9d_B1e-1917326984181uridylate kinase
1z9d_C1e-1917326984181uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001164.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541056.11e-58PREDICTED: uridylate kinase
TrEMBLA0A1U8E3R33e-57A0A1U8E3R3_CAPAN; uridylate kinase
STRINGORUFI04G12740.12e-50(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5046022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.24e-28Trihelix family protein