PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001097.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 420aa    MW: 45225.4 Da    PI: 6.3008
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001097.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.96.4e-17228274455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +++eY+ksLq
  Do001097.1 228 VHNLSERRRRDRINEKMRVLQELIPHC-----NKTDKASILDETIEYLKSLQ 274
                 6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.02E-17220278No hitNo description
SuperFamilySSF474591.06E-20222288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.279224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-21228283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-14228274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-17230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDGNARPAAN QKKPIVTDDD LVELLWHNGS VVAQPQAHQR PAPSDCPGSS GLTGEETAAW  60
FPDTLDDALE EDLYTQLWYS SIVDAAAHHE GTLPGPSSQP PPLELAHPAR PPVGSSGVES  120
SWAGDICSTF YGSNQVPMMP AGVSRGKEAA LQSEVPRGAG TGTSSSGGSG SNYGGSGLPS  180
DSGHVQKRKG RCRDDSDSRS EDAECEATEE TKSSRRSGTK RRTRAAEVHN LSERRRRDRI  240
NEKMRVLQEL IPHCNKTDKA SILDETIEYL KSLQMQVQIM WMTSGMAPMM FPGAHQFMPP  300
MALGMNSACI PAAQGLSQMP RLPYMNHPLP NHIPPNSSPA MNPVNSLSVA NQMQNVHLRE  360
ASNHFLHPDG GQTAVPQVPG THVYGPEISQ AEQHSRILEV PASTVVPTSR AGQPRTYDGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219236KRRTRAAEVHNLSERRRR
2232237ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001097.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793215.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
RefseqXP_025793216.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
RefseqXP_025793217.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
SwissprotQ10CH51e-166PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBLA0A1E5URH30.0A0A1E5URH3_9POAL; Transcription factor PIF5
STRINGSi035818m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.11e-29phytochrome interacting factor 3-like 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  3. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]
  4. Todaka D, et al.
    Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52
    [PMID:22984180]