PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001073.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family DBB
Protein Properties Length: 346aa    MW: 36251.6 Da    PI: 6.2758
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001073.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box171.2e-05444539
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 C+ +e  e++  C  ++  lC+ C    H        H +
  Do001073.1  4 LCSACEAAEARVLCCADEAALCARCDRDVHAAnrlagkHHR 44
                7******99******************99955677778554 PP
2zf-B_box28.82.6e-095596338
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                ++ C+ ++e ++ +fC +++ llC++C ++ H        H+
  Do001073.1 55 APDCDICQESHAYFFCVEDRALLCRSCDVAVHTAnafastHR 96
                578******99*******************995456666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.637147IPR000315B-box-type zinc finger
SMARTSM003367.2E-8147IPR000315B-box-type zinc finger
CDDcd000212.32E-7347No hitNo description
SMARTSM003365.3E-1553100IPR000315B-box-type zinc finger
PfamPF006434.5E-85696IPR000315B-box-type zinc finger
PROSITE profilePS501199.55658100IPR000315B-box-type zinc finger
CDDcd000217.06E-1058100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD EAALCARCDR DVHAANRLAG KHHRLPLQPP AAVSAPDCDI  60
CQESHAYFFC VEDRALLCRS CDVAVHTANA FASTHRRFLL TGVQVGLQPD AQEPEPHPPN  120
AASAAAPAPL PTPPPPPPAK KAHGSPAPLY SDDDIDWTAG GLGVGITGNM PDWSLVDEQF  180
GAAVSRPAEP MVTRTPSKRS PRRPLAAAFA VQGGLAGGMA DWPLDEFFGF SEFNAGLGFT  240
ENGTSKADSG KLGSTDGSPT GRSSSGSAKD MFGQVPEFHQ WSVPELPSPP TDSGLHWQGG  300
PRHGATTTDT AAVFVPDISS PENPFRCFAA GAGQPPTAAA KRRRRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001073.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424801e-145BT042480.1 Zea mays full-length cDNA clone ZM_BFb0287P19 mRNA, complete cds.
GenBankBT0642771e-145BT064277.1 Zea mays full-length cDNA clone ZM_BFc0155A07 mRNA, complete cds.
GenBankBT0668551e-145BT066855.1 Zea mays full-length cDNA clone ZM_BFb0081H14 mRNA, complete cds.
GenBankEU9643641e-145EU964364.1 Zea mays clone 278314 B-box zinc finger family protein mRNA, complete cds.
GenBankHQ8588001e-145HQ858800.1 Zea mays clone UT1887 ORPHAN transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819038.10.0B-box zinc finger protein 22-like
TrEMBLA0A1E5VKB90.0A0A1E5VKB9_9POAL; B-box zinc finger protein 22
STRINGPavir.Eb00238.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-47light-regulated zinc finger protein 1