PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001050.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 552aa    MW: 59683.3 Da    PI: 4.952
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001050.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-164390148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lvd+vk++G g+W+++ +  g+ R++k+c++rw ++l
       Do001050.1 43 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 90
                     79******************************************9986 PP
2Myb_DNA-binding461.2e-1496139146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++ +eE+ l++++++++G++ W++ a++++ gRt++++k++w++
       Do001050.1  96 KGAFIPEEERLIIQLHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 139
                      678889****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0016931.7E-2521552IPR016310Transcription factor, GAMYB
PROSITE profilePS5129416.6253890IPR017930Myb domain
SuperFamilySSF466892.17E-3040137IPR009057Homeodomain-like
SMARTSM007172.1E-144292IPR001005SANT/Myb domain
PfamPF002491.1E-144390IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-224497IPR009057Homeodomain-like
CDDcd001672.68E-114590No hitNo description
PROSITE profilePS5129423.52591145IPR017930Myb domain
SMARTSM007171.0E-1495143IPR001005SANT/Myb domain
PfamPF002498.2E-1496139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2498143IPR009057Homeodomain-like
CDDcd001672.04E-11101139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MYRVKSESDC EMMLQDQMDS PVADDGSSGG GSPHRGSGPP LKKGPWTSAE DAILVDYVKK  60
HGEGNWNAVQ KNTGLFRCGK SCRLRWANHL RPNLKKGAFI PEEERLIIQL HAKMGNKWAR  120
MAAHLPGRTD NEIKNYWNTR IKRCQRAGLP IYPASVCNQS SSEDQQLSGD FNCGENISND  180
LLSGNNLYLP DFTSDNFIAN PEALSYAPQL SAVSISNLLG QSFASKNCSF MDQVDQSGIL  240
KQSGCVLPAL SDTIDGVLSS VDQFSNDSEK LKQALGFDYL NEANASSKTI APFGVALSGS  300
HAFFNGNFSA SRPINGPLKM ELPSLQDTES DPNSWLKYTL APAMQPTELV DPYLHSPIAT  360
PSVKSECASP RNSGLLEELL HEAQALGSGK NQQPSVRSSS SSAGTPCETT TVASPEFDLC  420
QEYWDDHHSS FLNECTPFSG YSFTESTPVS AASPDIFHLS KISPQQSPSM GSGEQALEPK  480
HDTAGSPHPE NLRPDALFSG NTADPSTFNN AISILLGNDM NAECKPVLGG GITFGSSSWN  540
NMPHACEIPE FK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31391433106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001050.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0339250.0BT033925.1 Zea mays full-length cDNA clone ZM_BFc0044D10 mRNA, complete cds.
GenBankBT0626920.0BT062692.1 Zea mays full-length cDNA clone ZM_BFb0334D20 mRNA, complete cds.
GenBankBT0638280.0BT063828.1 Zea mays full-length cDNA clone ZM_BFc0110K24 mRNA, complete cds.
GenBankHQ8587500.0HQ858750.1 Zea mays clone UT1459 MYBGA transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819835.10.0transcription factor GAMYB-like
SwissprotA2WW870.0GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A1E5WEM80.0A0A1E5WEM8_9POAL; Transcription factor
STRINGPavir.Ea03206.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.13e-80myb domain protein 33