PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001033.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 528aa    MW: 59549.8 Da    PI: 7.3599
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001033.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.2e-1174114445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      W ++E+ ll+++++++G g+W  +a+++g +++  qc++++ 
       Do001033.1  74 WNADEEILLLEGIEMYGLGNWLEVAEHVG-TKSKLQCIDHYT 114
                      *****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250245.6E-1761524IPR016827Transcriptional adaptor 2
SMARTSM002911.6E-101055IPR000433Zinc finger, ZZ-type
PfamPF005692.9E-91253IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.8241457IPR000433Zinc finger, ZZ-type
SuperFamilySSF578502.35E-141477No hitNo description
CDDcd023352.46E-261462No hitNo description
PROSITE patternPS0135701643IPR000433Zinc finger, ZZ-type
SuperFamilySSF466893.29E-1267120IPR009057Homeodomain-like
PROSITE profilePS5129321.63369121IPR017884SANT domain
SMARTSM007175.0E-1070119IPR001005SANT/Myb domain
PfamPF002497.9E-1173114IPR001005SANT/Myb domain
CDDcd001671.21E-1074115No hitNo description
Gene3DG3DSA:1.10.10.604.6E-774116IPR009057Homeodomain-like
SuperFamilySSF466891.97E-20432517IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MGGTGEGGGK KALYHCNYCN KDISGKIRIK CSKCPDFDLC VECFSVGAEV TPHRSNHPYR  60
VMDNLSFPLI CPDWNADEEI LLLEGIEMYG LGNWLEVAEH VGTKSKLQCI DHYTTAYMNS  120
PCYPLPDMSH VNGKNRKELL AMAKVQGENK KGTSLLPGEL TPKAESPFSP SRVKLEDALG  180
DGPAGRSPSH MAGGANKKAS NAGQIKDGAN VSKVEDGHVD RSVGVKKPRY SADEGPSLTE  240
LSGYNSKRHE FDPEYDNDAE QALAEMEFKE TDSETDRELK LRVLRIYLSR LDERKRRKEF  300
ILERNLLFPN PLEKDLTNED KEVYHRYKVF MRFLSKEEHE ALIRSVIEER KIRRRIQELQ  360
ECRSAGCRTL AEAKIHIEQK RKKEYELSAQ KAKESGQLIP NNKSVQKMNR PMKIESDGNL  420
DPKKGGAGLD SPKTTGLTSV KQWDDWDIVG LPGAELLSAS EKLLCCQNRL LPSHYLRMQE  480
VLMQEIFKGS VHKKEDAHVL FKVDPTKVDT VYDMVTKKLG NHEEAPTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E4e-38141295120Transcriptional adapter 2
6cw3_G4e-38141295120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293298RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0413330.0BT041333.1 Zea mays full-length cDNA clone ZM_BFb0092G09 mRNA, complete cds.
GenBankKJ7274980.0KJ727498.1 Zea mays clone pUT5357 MYB-related transcription factor (MYBR66) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796153.10.0transcriptional adapter ADA2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A1E5W1L30.0A0A1E5W1L3_9POAL; Transcriptional adapter
STRINGSi034940m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]