PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000970.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 335aa    MW: 36009.5 Da    PI: 4.9087
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000970.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.83.2e-14121163349
         AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaa 49 
                 y+GVr +k +g+W+AeIr  +     + kr +lg+f+ta eA +a+  a
  Do000970.1 121 YRGVRLRK-WGKWAAEIRNpF-----TgKRQWLGTFDTAGEASAAYLSA 163
                 9*****99.**********55.....45**********99*****9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-13120183IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-15120169IPR016177DNA-binding domain
PfamPF008478.9E-8120163IPR001471AP2/ERF domain
PROSITE profilePS5103216.898120178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-18120171IPR001471AP2/ERF domain
PRINTSPR003672.5E-8121132IPR001471AP2/ERF domain
CDDcd000182.88E-19121167No hitNo description
PRINTSPR003672.5E-8143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAPLNHQQIL IKKALAKKPK TMRISGFGLK PSAALIKARP QQQQPPAPVQ PRRRVRVLFE  60
DPDATDSDSS DDEEAGFPTG PLKSKSKRFS FEMFVGKAPA KPVVPAATVA ACTSGGTPES  120
YRGVRLRKWG KWAAEIRNPF TGKRQWLGTF DTAGEASAAY LSASRSFADE KRRRRGQPVP  180
ASSPATSASA TPTASSSSST SAALFAHPSP SSVVEATKPA AKPESPEPVA TPMLPSTESA  240
AQLPDDPEFY QDLLRGLHLP DIDPMDFRAG LDALDVSEAS FGLDDEHDLL LGDFVDEDME  300
LALGLDDIND VFPELPGCEL GRGMDDFLQT VDFCV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo000970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968058.11e-168ethylene-responsive transcription factor ERF118
TrEMBLA0A1E5V6S30.0A0A1E5V6S3_9POAL; Uncharacterized protein
STRINGSi002186m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.12e-15ERF family protein