PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do000953.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 268aa MW: 29088.2 Da PI: 9.4879 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 8.2e-11 | 74 | 119 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN ++ Lr ++P a + ++Ka+ L ++v+ +k+L Do000953.1 74 VHSEAERRRRERINAHLAALRMMIPDA-----RQMDKATLLARVVRQLKDL 119 59************************9.....78**********9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.33E-12 | 63 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.538 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-8 | 74 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-11 | 74 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-9 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.673 | 160 | 236 | IPR002912 | ACT domain |
Gene3D | G3DSA:3.30.70.260 | 4.3E-5 | 161 | 209 | No hit | No description |
SuperFamily | SSF55021 | 1.6E-5 | 161 | 209 | No hit | No description |
CDD | cd04873 | 9.98E-10 | 162 | 229 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MAPASACQPF QEGKQRQQHL PLRHGDGSVL PPVYRGAVLP LRQAGSAPPP PPPAAQEPPL 60 SSGRSVTEAQ ALKVHSEAER RRRERINAHL AALRMMIPDA RQMDKATLLA RVVRQLKDLK 120 RKAAETTPPL HIPAEANSVT VDCYTGAAAV GYGRPVAYVR ASVSCDDRPG LLADLAGEFR 180 RLRLKPLRAD VSSLGGRARC EFMLCGGEEG DTVTAGRVKA LEEGVRQALA NAACPEMAYG 240 CNYRSRRQRV LESHYVLGHG LDVDDHGW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 83 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do000953.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978282.1 | 1e-130 | transcription factor bHLH51 | ||||
TrEMBL | A0A1E5W3S1 | 0.0 | A0A1E5W3S1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J32610.1.p | 1e-130 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3347 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 4e-28 | bHLH family protein |